Browse Element(s) Details


OsAffx.13071.1.S1_at

Description tigr:9631.m02682
TID=OsAffx.13071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g272007/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27160OsAffx.25246.1.S1_x_at9/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.2.A1_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.5.S1_x_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27170OsAffx.25247.1.S1_x_at11/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27170OsAffx.25247.2.S1_x_at2/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27190Os.27226.1.S1_at10/113+15546661..15550897ICE-like protease p20 domain containing protein, expressed
LOC_Os03g27200OsAffx.13071.1.S1_at7/113+15562084..15562526expressed protein
LOC_Os03g27210OsAffx.25247.2.S1_x_at10/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27210OsAffx.25247.1.S1_x_at3/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27230Os.7075.1.S1_at11/113+15582592..15587514Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13071.1.S1_at--529--5171Chr03:15559567..15559591 (25 bp)
GCAAGCTATTGCTGTCGGTCTCACA
NONE
OsAffx.13071.1.S1_at--237--3811NONE
CTCCGCCGCCCATTATATAATAGAT
NONE
OsAffx.13071.1.S1_at--655--551Chr03:15561917..15561941 (25 bp)
ATGCCCTCCCGGCTAAGGGAAGACG
NONE
OsAffx.13071.1.S1_at--271--5031Chr03:15561945..15562239 (25 bp)
GCAGTAGCTGCATCGAAGGGCAATT
NONE
OsAffx.13071.1.S1_at--419--7831Chr03:15562277..15562301 (25 bp)
GGTAATCTGCAAGGGCGCACACACA
LOC_Os03g27200
OsAffx.13071.1.S1_at--540--8391Chr03:15562290..15562314 (25 bp)
GGCGCACACACAAAATTGGACCCAG
LOC_Os03g27200
OsAffx.13071.1.S1_at--1075--8091Chr03:15562307..15562331 (25 bp)
GGACCCAGAGGCTTATTGTTTTATT
LOC_Os03g27200
OsAffx.13071.1.S1_at--1114--10391Chr03:15562327..15562351 (25 bp)
TTATTTTGTACTACCTTCTCTGGCT
LOC_Os03g27200
OsAffx.13071.1.S1_at--426--851Chr03:15562414..15562438 (25 bp)
ATGGCTTCGAATGCCATGGCACGCA
LOC_Os03g27200
OsAffx.13071.1.S1_at--725--791Chr03:15562438..15562462 (25 bp)
ATGTGGGAGACCTCACTGCAGGCGC
LOC_Os03g27200
OsAffx.13071.1.S1_at--749--6251Chr03:15562464..15562488 (25 bp)
GATGTCGACGTGTCTGAGGTGAACA
LOC_Os03g27200
Target Sequence 
GCAAGCTATTGCTGTCGGTCTCACAGCCGCGCCACGCCACGATGCTATACCCTCCGCCGCCCATTATATAATAGATTATG
ACGTCACCAAGGGGATAGGTGGCGCCGACAAGCGGGCCCCACCTGTCGGTGGCTCAAGGGAGGCGGGTTGGAGGGCAGTG
CGCAGTGAGGAGACAGGTGGCATGTGGCGCGCGGCGACTAGCGCCTGGCGGGAGAAGAGCTGGGTGATGACGGCAATGGC
GGTGATGACCGGCGGAGGTGGCGTTGCCTCGATGCCCTCCCGGCTAAGGGAAGACGGCAGCAGTAGCTGCATCGAAGGGC
AATTGATCAATGCAGATGCGGTAATCTGCAAGGGCGCACACACAAAATTGGACCCAGAGGCTTATTGTTTTATTTTGTAC
TACCTTCTCTGGCTCGGTGCCGTCCTTGGTGTTAGAGACGGCAAGGCAGATGAGGTGCAGCAAAAAGGCAATGGGGATGG
CTTCGAATGCCATGGCACGCATGTGGGAGACCTCACTGCAGGCGCAGATGTCGACGTGTCTGAGGTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis