Browse Element(s) Details


OsAffx.25247.1.S1_x_at

Description tigr:9631.m02679
TID=OsAffx.25247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative metacaspase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2717011/11latex-abundant family protein, putative, expressed
LOC_Os03g272103/11latex-abundant family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27140NANA3+15515748..15521685retrotransposon protein, putative, unclassified
LOC_Os03g27150Os.28943.1.S1_x_at4/113+15522306..15525536retrotransposon protein, putative, unclassified
LOC_Os03g27160OsAffx.25246.1.S1_x_at9/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.2.A1_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.5.S1_x_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27170OsAffx.25247.1.S1_x_at11/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27170OsAffx.25247.2.S1_x_at2/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27190Os.27226.1.S1_at10/113+15546661..15550897ICE-like protease p20 domain containing protein, expressed
LOC_Os03g27200OsAffx.13071.1.S1_at7/113+15562084..15562526expressed protein
LOC_Os03g27210OsAffx.25247.2.S1_x_at10/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27210OsAffx.25247.1.S1_x_at3/113+15563787..15565680latex-abundant family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25247.1.S1_x_at--275--9491Chr03:15542945..15542969 (25 bp)
TCTGCCCCGTGGACTTCGAGCGGAG
LOC_Os03g27170
OsAffx.25247.1.S1_x_at--315--8071Chr03:15542924..15542948 (25 bp)
GGAGCGGCAAGATCCTCGACGACGA
LOC_Os03g27170
OsAffx.25247.1.S1_x_at--889--4052Chr03:15564965..15564989 (25 bp)
CGAGATCAACGAGACCATCGTCCGG
LOC_Os03g27210
OsAffx.25247.1.S1_x_at--58--512Chr03:15564910..15564934 (25 bp)
ATCGTGGACACGTGCCACAGCGGCA
LOC_Os03g27210
OsAffx.25247.1.S1_x_at--161--8315Chr08:23977396..23977419 (24 bp)
GGCTACTGGCAGTGGGAGAACCACT
NONE
OsAffx.25247.1.S1_x_at--141--9671Chr03:15542705..15542729 (25 bp)
TCAGCGGCTGCAGCGACGATCAGAA
LOC_Os03g27170
OsAffx.25247.1.S1_x_at--516--5771Chr03:15542691..15542715 (25 bp)
GACGATCAGAAATCCGCAGACAGCA
LOC_Os03g27170
OsAffx.25247.1.S1_x_at--607--2151Chr03:15542594..15542696 (25 bp)
ACAGCAGCGGATTCTCGTCGGAGCA
LOC_Os03g27170
OsAffx.25247.1.S1_x_at--238--10631Chr03:15542400..15542424 (25 bp)
TTCGTCCGCAAGATGATCCCGTCCG
LOC_Os03g27170
OsAffx.25247.1.S1_x_at--1140--2791Chr03:15542391..15542415 (25 bp)
AAGATGATCCCGTCCGGCGGCGTGC
LOC_Os03g27170
OsAffx.25247.1.S1_x_at--685--9051Chr03:15542271..15542295 (25 bp)
TGCAGGAGCCGCAGCTTTGCGCGTC
LOC_Os03g27170
Target Sequence 
TCTGCCCCGTGGACTTCGAGCGGAGCGGCAAGATCCTCGACGACGAGATCAACGAGACCATCGTCCGGCCCCTCGTCGCC
GGCGCGAAGCTCCACGCCATCGTGGACACGTGCCACAGCGGCACCATCCTGGACCTCCCCTTCCTCTGCCGCCTCTCCCG
GACGGGCTACTGGCAGTGGGAGAACCACTGCCGCCGCCCGGAGCTCGCCAAGGGCACCAGCGGCGGCCTCGCCATCTCCA
TCAGCGGCTGCAGCGACGATCAGAAATCCGCAGACAGCAGCGGATTCTCGTCGGAGCAGGCGGCGGCGGCGGCGGCGATC
GGGGCGATGACGTACAGCTTCATCAGGGCGGTGGAGTCGGAGCCCGGGACGACGTACGGGCGGCTGCTGGCGGCGATGCG
GGCGACGATCCGGGAGGGGCAGCAGGGGAGCAGCGTCCGGCGGCTCCTCCCCGGCCGCCTCGGCTCCTTCGTCCGCAAGA
TGATCCCGTCCGGCGGCGTGCAGGAGCCGCAGCTTTGCGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25247.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis