Browse Element(s) Details


OsAffx.25246.1.S1_x_at

Description tigr:9631.m02678
TID=OsAffx.25246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g271609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27140NANA3+15515748..15521685retrotransposon protein, putative, unclassified
LOC_Os03g27150Os.28943.1.S1_x_at4/113+15522306..15525536retrotransposon protein, putative, unclassified
LOC_Os03g27160OsAffx.25246.1.S1_x_at9/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.2.A1_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.5.S1_x_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27170OsAffx.25247.1.S1_x_at11/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27170OsAffx.25247.2.S1_x_at2/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27190Os.27226.1.S1_at10/113+15546661..15550897ICE-like protease p20 domain containing protein, expressed
LOC_Os03g27200OsAffx.13071.1.S1_at7/113+15562084..15562526expressed protein
LOC_Os03g27210OsAffx.25247.2.S1_x_at10/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27210OsAffx.25247.1.S1_x_at3/113+15563787..15565680latex-abundant family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25246.1.S1_x_at--652--8051Chr03:15539294..15539318 (25 bp)
GGAGATCGCCGGTATCAAGCAGCAA
LOC_Os03g27160
OsAffx.25246.1.S1_x_at--112--2731Chr03:15539310..15539334 (25 bp)
AAGCAGCAAGCATCCGTTGCCGGCG
LOC_Os03g27160
OsAffx.25246.1.S1_x_at--249--9651Chr03:15539347..15539371 (25 bp)
TCAGTCTCGTCATCCTATCAGCTCT
LOC_Os03g27160
OsAffx.25246.1.S1_x_at--686--9313Chr05:27525131..27525151 (21 bp)
TCCCGTCAGCAACAAGCGCATGCAT
NONE
OsAffx.25246.1.S1_x_at--995--631NONE
ATGCATCTTCATCAGGCATATCACT
NONE
OsAffx.25246.1.S1_x_at--671--4971NONE
GCATCTTCATCAGGCATATCACTAA
NONE
OsAffx.25246.1.S1_x_at--527--3571Chr03:15541204..15541228 (25 bp)
CATATCACTAACAGTGGCGTCAAGA
LOC_Os03g27160
OsAffx.25246.1.S1_x_at--1137--371Chr03:15541207..15541231 (25 bp)
ATCACTAACAGTGGCGTCAAGATGG
LOC_Os03g27160
OsAffx.25246.1.S1_x_at--1094--2011Chr03:15541210..15541234 (25 bp)
ACTAACAGTGGCGTCAAGATGGAGC
LOC_Os03g27160
OsAffx.25246.1.S1_x_at--582--3731Chr03:15541211..15541235 (25 bp)
CTAACAGTGGCGTCAAGATGGAGCG
LOC_Os03g27160
OsAffx.25246.1.S1_x_at--185--4651Chr03:15541220..15541244 (25 bp)
GCGTCAAGATGGAGCGGGCGACCAC
LOC_Os03g27160
Target Sequence 
GGAGATCGCCGGTATCAAGCAGCAAGCATCCGTTGCCGGCGAGCCACCGTCCGTCAGTCTCGTCATCCTATCAGCTCTCC
CGTCAGCAACAAGCGCATGCATCTTCATCAGGCATATCACTAACAGTGGCGTCAAGATGGAGCGGGCGACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25246.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis