Browse Element(s) Details


OsAffx.13075.1.S1_at

Description tigr:9631.m02707
TID=OsAffx.13075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2741010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27400OsAffx.25252.1.S1_at11/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400OsAffx.25903.3.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400Os.46459.1.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27410OsAffx.13075.1.S1_at10/113+15703266..15703888hypothetical protein
LOC_Os03g27420OsAffx.3342.1.S1_at11/113+15706040..15710921Cyclin, N-terminal domain containing protein
LOC_Os03g27430OsAffx.25253.1.S1_at11/113+15718849..15719594hypothetical protein
LOC_Os03g27440OsAffx.25254.1.S1_at11/113+15724063..15724668hypothetical protein
LOC_Os03g27450Os.14128.1.S1_at8/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27450Os.2213.2.S1_x_at1/113+15726036..15730581small GTP-binding protein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13075.1.S1_at--262--5731Chr03:15703803..15703827 (25 bp)
GACTGGAGCGGCAGTGGTCAGCGGT
LOC_Os03g27410
OsAffx.13075.1.S1_at--514--9152Chr03:15703720..15703744 (25 bp)
TGCGACTCCGTCGAGGGTTTCGATA
LOC_Os03g27410
OsAffx.13075.1.S1_at--647--4092Chr03:15703718..15703742 (25 bp)
CGACTCCGTCGAGGGTTTCGATAGA
LOC_Os03g27410
OsAffx.13075.1.S1_at--1115--3792Chr03:15703715..15703739 (25 bp)
CTCCGTCGAGGGTTTCGATAGACCA
LOC_Os03g27410
OsAffx.13075.1.S1_at--469--9372Chr03:15703710..15703734 (25 bp)
TCGAGGGTTTCGATAGACCAACGAT
LOC_Os03g27410
OsAffx.13075.1.S1_at--151--12Chr03:15703708..15703731 (24 bp)
AGGGTTTCGATAGACCAACGATTGC
LOC_Os03g27410
OsAffx.13075.1.S1_at--271--10312Chr03:15703470..15703727 (25 bp)
TTTCGATAGACCAACGATTGCGATC
LOC_Os03g27410
OsAffx.13075.1.S1_at--588--291Chr03:15703465..15703722 (25 bp)
ATAGACCAACGATTGCGATCGCCGT
LOC_Os03g27410
OsAffx.13075.1.S1_at--710--1371NONE
AGACCAACGATTGCGATCGCCGTCG
NONE
OsAffx.13075.1.S1_at--437--1151Chr03:15703402..15703426 (25 bp)
AGTCGCCGAGCCGAGTCCCTGCGGC
LOC_Os03g27410
OsAffx.13075.1.S1_at--850--1131Chr03:15703389..15703413 (25 bp)
AGTCCCTGCGGCCACGGTCGTCGTC
LOC_Os03g27410
Target Sequence 
GACTGGAGCGGCAGTGGTCAGCGGTGGCGCACGATGGTGGTGGAGGAGGCACGCCGGCGATCTGGGGCGGGCGCACGGCG
GCGTGCGACTCCGTCGAGGGTTTCGATAGACCAACGATTGCGATCGCCGTCGTCGAGCCTCCACGGTCGTCGTCGCCGAG
CCCCCCGCAGTCGCCGAGCCGAGTCCCTGCGGCCACGGTCGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis