Browse Element(s) Details


OsAffx.13079.1.S1_at

Description tigr:9631.m02724
TID=OsAffx.13079.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2758011/11hypothetical protein
LOC_Os03g275709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27520OsAffx.9572.1.S1_at1/113+15765275..15767372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27530OsAffx.25255.1.S1_at10/113+15768495..15775420Retinoid-inducible serine carboxypeptidase precursor, putative
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein
LOC_Os03g27570OsAffx.13079.1.S1_at9/113+15789001..15789291hypothetical protein
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein
LOC_Os03g27590Os.50043.1.A1_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.50043.1.A1_x_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_x_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.2.S1_at3/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27610Os.7429.1.S1_at11/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.4.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.3.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13079.1.S1_at--550--1432Chr03:15791063..15791087 (25 bp)
AGAACAATCTGCCACGTGGTCTCAT
LOC_Os03g27580
OsAffx.13079.1.S1_at--636--7812Chr03:15791080..15791104 (25 bp)
GGTCTCATCCCACAAGGAGTGACGT
LOC_Os03g27580
OsAffx.13079.1.S1_at--3--8892Chr03:15791121..15791145 (25 bp)
TGATGGCCACCTTGAGGTGACCTTG
LOC_Os03g27580
OsAffx.13079.1.S1_at--275--1772Chr03:15791170..15791194 (25 bp)
ACCGTCGGAGGCTCGCCGTACAAGT
LOC_Os03g27580
OsAffx.13079.1.S1_at--459--9332Chr03:15791182..15791206 (25 bp)
TCGCCGTACAAGTTTCGCTTTGACA
LOC_Os03g27580
OsAffx.13079.1.S1_at--408--6832Chr03:15791193..15791217 (25 bp)
GTTTCGCTTTGACAGCAAATTCGTG
LOC_Os03g27580
OsAffx.13079.1.S1_at--244--2152Chr03:15791204..15791228 (25 bp)
ACAGCAAATTCGTGGGACTCATCAA
LOC_Os03g27580
OsAffx.13079.1.S1_at--408--2013Chr03:15791661..15791685 (25 bp)
ACTCATCAAGTCAGGGTCTATCAGC
LOC_Os03g27580
OsAffx.13079.1.S1_at--199--3232Chr03:15791226..15791250 (25 bp)
CAAGTCAGGGTCTATCAGCGAGATA
LOC_Os03g27580
OsAffx.13079.1.S1_at--772--1031Chr03:15791738..15791762 (25 bp)
AGGTCGACCATGCTGGTAACCAGCT
LOC_Os03g27580
OsAffx.13079.1.S1_at--504--7051Chr03:15791753..15791777 (25 bp)
GTAACCAGCTGACGTTCAAGGTCGG
LOC_Os03g27580
Target Sequence 
AGAACAATCTGCCACGTGGTCTCATCCCACAAGGAGTGACGTCGTACGTGCTCCACCCTGATGGCCACCTTGAGGTGACC
TTGCCTNGCGAGTGCAACTTNGCCNTCACCGTCGGAGGCTCGCCGTACAAGTTTCGCTTTGACAGCAAATTCGTGGGACT
CATCAAGTCAGGGTCTATCAGCGAGATAAANGGTGTGAGGGTTNAGGTCGACCATGCTGGTAACCAGCTGACGTTCAAGG
TCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis