Browse Element(s) Details


OsAffx.13082.1.S1_at

Description tigr:9631.m02736
TID=OsAffx.13082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2769011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27650NANA3+15826801..15827559retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27670Os.26886.2.S1_s_at10/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.6.S1_s_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670OsAffx.16467.1.S1_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.3.S1_x_at5/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27680OsAffx.25256.1.S1_at11/113+15842539..15845950hypothetical protein
LOC_Os03g27690OsAffx.13082.1.S1_at11/113+15852435..15852743hypothetical protein
LOC_Os03g27700OsAffx.3348.1.S1_at10/113+15856534..15860546hypothetical protein
LOC_Os03g27700OsAffx.14655.1.S1_at1/113+15856534..15860546hypothetical protein
LOC_Os03g27710OsAffx.29576.5.S1_at5/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.19006.1.S1_at3/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710Os.54924.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_x_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27720Os.47463.1.S1_x_at6/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27720Os.14491.2.S1_x_at5/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27730NANA3+15869253..15875240transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13082.1.S1_at--225--7311Chr03:15852483..15852507 (25 bp)
GTGCTAATTATTCTTGCCTCTCAAG
LOC_Os03g27690
OsAffx.13082.1.S1_at--817--4451Chr03:15852498..15852522 (25 bp)
GCCTCTCAAGTAATGCTTTCTCATG
LOC_Os03g27690
OsAffx.13082.1.S1_at--372--4891Chr03:15852512..15852536 (25 bp)
GCTTTCTCATGGCATACCTCTTGAG
LOC_Os03g27690
OsAffx.13082.1.S1_at--67--8291Chr03:15852522..15852546 (25 bp)
GGCATACCTCTTGAGATGCATAGGA
LOC_Os03g27690
OsAffx.13082.1.S1_at--640--9571Chr03:15852530..15852554 (25 bp)
TCTTGAGATGCATAGGAGGTACTTA
LOC_Os03g27690
OsAffx.13082.1.S1_at--948--6151Chr03:15852545..15852569 (25 bp)
GAGGTACTTATTATCGCATGCAGCC
LOC_Os03g27690
OsAffx.13082.1.S1_at--1150--10411Chr03:15852555..15852579 (25 bp)
TTATCGCATGCAGCCGATGCAACAA
LOC_Os03g27690
OsAffx.13082.1.S1_at--624--6231Chr03:15852587..15852611 (25 bp)
GATGGAGGGAACAATCACCCCTACA
LOC_Os03g27690
OsAffx.13082.1.S1_at--640--5511Chr03:15852595..15852619 (25 bp)
GAACAATCACCCCTACAGAAGGTGA
LOC_Os03g27690
OsAffx.13082.1.S1_at--94--3291Chr03:15852634..15852658 (25 bp)
CAAACGACGATGTTCGCCCTACTAA
LOC_Os03g27690
OsAffx.13082.1.S1_at--779--3511Chr03:15852684..15852708 (25 bp)
CATGCTTTCACCAACAACAAAATTG
LOC_Os03g27690
Target Sequence 
GTGCTAATTATTCTTGCCTCTCAAGTAATGCTTTCTCATGGCATACCTCTTGAGATGCATAGGAGGTACTTATTATCGCA
TGCAGCCGATGCAACAAAAGGGGTGATGGAGGGAACAATCACCCCTACAGAAGGTGAAGGATTTGCTGGGGCAAACGACG
ATGTTCGCCCTACTAACCCGGGCCATAGCCCGGGGATCGGCCATGCTTTCACCAACAACAAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis