Browse Element(s) Details


OsAffx.13108.1.S1_at

Description tigr:9631.m02866
TID=OsAffx.13108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2940011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29370NANA3+16677876..16678643hypothetical protein
LOC_Os03g29380OsAffx.25276.1.S1_at11/113+16684201..16685551hypothetical protein
LOC_Os03g29389NANA3+16694363..16695842hypothetical protein
LOC_Os03g29400OsAffx.13108.1.S1_at11/113+16702970..16703812hypothetical protein
LOC_Os03g29410Os.52616.1.A1_at11/113+16704081..16708989serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g29420OsAffx.3361.1.S1_at11/113+16720317..16721451hypothetical protein
LOC_Os03g29430Os.24648.1.A1_at1/113+16726136..16730428retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13108.1.S1_at--1036--6291Chr03:16703096..16703120 (25 bp)
GATGATGCGGCCGTTGAGGTCCATC
LOC_Os03g29400
OsAffx.13108.1.S1_at--822--9131Chr03:16703101..16703125 (25 bp)
TGCGGCCGTTGAGGTCCATCATGGA
LOC_Os03g29400
OsAffx.13108.1.S1_at--912--3551Chr03:16703117..16703141 (25 bp)
CATCATGGAGGCCTAGTGGCACCGT
LOC_Os03g29400
OsAffx.13108.1.S1_at--588--9471Chr03:16703174..16703198 (25 bp)
TCTGTTGCTGCCATATTCTCTTTCT
LOC_Os03g29400
OsAffx.13108.1.S1_at--1139--4011Chr03:16703238..16703262 (25 bp)
CGTCATGGCTGCGACAAGCAAGGGT
LOC_Os03g29400
OsAffx.13108.1.S1_at--1075--9151Chr03:16703358..16703382 (25 bp)
TGCCGCCTGCCGACTTGGAGAGAAT
LOC_Os03g29400
OsAffx.13108.1.S1_at--148--5291Chr03:16703379..16703403 (25 bp)
GAATGGAAATCGGAGGCGTCCTCCC
LOC_Os03g29400
OsAffx.13108.1.S1_at--142--6051Chr03:16703700..16703724 (25 bp)
GAGATATGGTCCGTACTGCTGTATA
LOC_Os03g29400
OsAffx.13108.1.S1_at--858--7791Chr03:16703707..16703731 (25 bp)
GGTCCGTACTGCTGTATATCACGAG
LOC_Os03g29400
OsAffx.13108.1.S1_at--1058--6871Chr03:16703720..16703744 (25 bp)
GTATATCACGAGGTAATTCAAGCTG
LOC_Os03g29400
OsAffx.13108.1.S1_at--907--2871Chr03:16703758..16703782 (25 bp)
AAGTGGCCACCTGCAGGCCGCAGGT
LOC_Os03g29400
Target Sequence 
GATGATGCGGCCGTTGAGGTCCATCATGGAGGCCTAGTGGCACCGTCTCCTCTCCCTGACCCACCCCCACCCTCACCCTC
TGTTGCTGCCATATTCTCTTTCTCTTCTTCCTCCCTTATCTTTCCTCCTCCCCCATGGAGACCGTCATGGCTGCGACAAG
CAAGGGTGTGTCGTGGTGGGGGAGGAGGTGTGGAAGAGGGGCGTGTTGCCCGGCGTCGACAAAGCCGCCGTCCATCCCCA
TGTTGCCCGCCACCCTTCTCCTTGCCGCCTGCCGACTTGGAGAGAATGGAAATCGGAGGCGTCCTCCCTTCCCACAGCCG
CAGCGCCCTCCCTGTCACCGGCCCGCTCGATGCCCCTCAACGCCGAATCATCGTCGCCTGCCATGTCTGCCTCGCCCCCC
AGGGCGACAATCAACAGAGAGAAGAGATAGAGGTGAGAGATATGGTCCGTACTGCTGTATATCACGAGGTAATTCAAGCT
GAATGCCAAATGTCAAGTGGCCACCTGCAGGCCGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis