Browse Element(s) Details


OsAffx.13154.1.S1_x_at

Description tigr:9631.m03156
TID=OsAffx.13154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3226011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32200NANA3+18378080..18378877hypothetical protein
LOC_Os03g32210NANA3+18381215..18383064hypothetical protein
LOC_Os03g32220Os.55921.1.S1_at11/113+18385327..18386131Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32230Os.50970.1.S1_at11/113+18390892..18391988Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32240OsAffx.25336.1.S1_at11/113+18395746..18397416hypothetical protein
LOC_Os03g32250OsAffx.3387.1.S1_at11/113+18399271..18400005expressed protein
LOC_Os03g32260OsAffx.13154.1.S1_x_at11/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.13154.1.S1_at10/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.21755.1.S1_x_at1/113+18401290..18401888hypothetical protein
LOC_Os03g32270Os.53091.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32270Os.12141.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13154.1.S1_x_at--670--8471Chr03:18401819..18401839 (21 bp)
TGGAAGGAGTCCGAAATTGGTTTCG
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--695--8231Chr03:18401411..18401435 (25 bp)
GGCAACAGGCGCGTCAGGCGACTTC
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--475--10591Chr03:18401389..18401413 (25 bp)
TTCGGCGGTTGGACCGGTTGATCTA
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--12--79115Chr12:21833491..21833513 (23 bp)
GGTTGATCTATACCGGTCAGACCAG
NONE
OsAffx.13154.1.S1_x_at--485--7111Chr03:18401359..18401383 (25 bp)
GTCAGACCAGCGACATCTGAGCGGT
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--824--9651Chr03:18401358..18401382 (25 bp)
TCAGACCAGCGACATCTGAGCGGTC
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--26--3431Chr03:18401357..18401381 (25 bp)
CAGACCAGCGACATCTGAGCGGTCA
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--813--1371Chr03:18401356..18401380 (25 bp)
AGACCAGCGACATCTGAGCGGTCAG
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--593--5851Chr03:18401355..18401379 (25 bp)
GACCAGCGACATCTGAGCGGTCAGA
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--243--1711Chr03:18401354..18401378 (25 bp)
ACCAGCGACATCTGAGCGGTCAGAC
LOC_Os03g32260
OsAffx.13154.1.S1_x_at--437--1636Chr08:18312553..18312572 (20 bp)
AGCGACATCTGAGCGGTCAGACCGG
NONE
Target Sequence 
TGGAAGGAGTCCGAAATTGGTTTCGACGGTCTAACCGGCGACTCACCGGCGGTCAGACTGGCGGCAAGGTAGCGGTCAGA
CCGGCAGGAGCGAGGCGGTCAGACCAGCGGCGGCAACAGGCGCGTCAGGCGACTTCGGCGGTTGGACCGGTTGATCTATA
CCGGTCAGACCAGCGACATCTGAGCGGTCAGACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13154.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis