Browse Element(s) Details


OsAffx.13205.1.S1_at

Description tigr:9631.m03556
TID=OsAffx.13205.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3711010/11hypothetical protein
LOC_Os03g367801/11Elongation factor G, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37050OsAffx.10473.1.S1_at11/113+20500767..20502777transposon protein, putative, Mutator sub-class
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g37140Os.51979.1.S1_at11/113+20539056..20544407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13205.1.S1_at--172--2931Chr03:20522837..20523088 (25 bp)
AAGGACCGTGCCAACGTCAGGAGGA
LOC_Os03g37110
OsAffx.13205.1.S1_at--850--8711Chr03:20522727..20522751 (25 bp)
TGTCGTGCGGGATGGCTACTCCCAG
LOC_Os03g37110
OsAffx.13205.1.S1_at--723--6231Chr03:20522717..20522741 (25 bp)
GATGGCTACTCCCAGTGGAATGCTG
LOC_Os03g37110
OsAffx.13205.1.S1_at--157--7531NONE
GTGGAAGTCCGAAGCGACATCAGGA
NONE
OsAffx.13205.1.S1_at--741--5111Chr03:20521076..20521100 (25 bp)
GCACATGTGAGACGATGGAGCATCA
LOC_Os03g37110
OsAffx.13205.1.S1_at--979--5911Chr03:20521059..20521083 (25 bp)
GAGCATCAAGGTGTAGCCTCACTTT
LOC_Os03g37110
OsAffx.13205.1.S1_at--102--9991Chr03:20521046..20521070 (25 bp)
TAGCCTCACTTTTCGTACAGATTGC
LOC_Os03g37110
OsAffx.13205.1.S1_at--615--3651Chr03:20521038..20521062 (25 bp)
CTTTTCGTACAGATTGCACCAGCAA
LOC_Os03g37110
OsAffx.13205.1.S1_at--632--10731Chr03:20521025..20521049 (25 bp)
TTGCACCAGCAATGCAGCTGTACAA
LOC_Os03g37110
OsAffx.13205.1.S1_at--351--3391Chr03:20521011..20521035 (25 bp)
CAGCTGTACAAGTTTCAGGGCGGTA
LOC_Os03g37110
OsAffx.13205.1.S1_at--365--8632Chr03:20360621..20360642 (22 bp)
TGGGTGCAGCCAGAATGTTGTTGCA
LOC_Os03g36780
Target Sequence 
AAGGACCGTGCCAACGTCAGGAGGAACGTGGAAGTGGCGACAGGCATGAGAGGAAGCGTGTGGCGCTACCTGGGAGCAGA
AGGCGTCCTCTCTCCATTCCTCATGCTTGCTGTCGTGCGGGATGGCTACTCCCAGTGGAATGCTGGCGAAGCACAGAGGC
ACGCGACCAACGGTGGTAGGCCGACGTGGCGTGAGGTGGCACGCCCGGAGGCGACGGGACCGTGGAAGTCCGAAGCGACA
TCAGGACATGAGACAGAAATCAAAGCAATATGCACATGTGAGACGATGGAGCATCAAGGTGTAGCCTCACTTTTCGTACA
GATTGCACCAGCAATGCAGCTGTACAAGTTTCAGGGCGGTAGTGGGTGCAGCCAGAATGTTGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis