Browse Element(s) Details


OsAffx.13241.1.S1_at

Description tigr:9631.m03733
TID=OsAffx.13241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3888010/11retrotransposon, putative, centromere-specific
LOC_Os06g245101/11retrotransposon, putative, centromere-specific
LOC_Os07g135601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38850Os.46012.2.S1_x_at6/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.27088.1.A1_x_at5/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850Os.46012.3.S1_x_at4/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38850OsAffx.10222.1.S1_x_at1/113+21527603..21535195retrotransposon protein, putative, unclassified
LOC_Os03g38860OsAffx.25424.1.S1_at9/113+21540453..21542121hypothetical protein
LOC_Os03g38864NANA3+21542720..21543520hypothetical protein
LOC_Os03g38870OsAffx.25425.1.S1_at11/113+21554307..21555422Dof domain, zinc finger family protein, expressed
LOC_Os03g38880OsAffx.13241.1.S1_at10/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38880Os.54774.1.S1_x_at1/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38890NANA3+21563996..21564628retrotransposon, putative, centromere-specific
LOC_Os03g38900NANA3+21567081..21567700hypothetical protein
LOC_Os03g38920OsAffx.3439.1.S1_at8/113+21573782..21576021hypothetical protein
LOC_Os03g38930Os.16359.1.S1_at11/113+21577574..21583302expressed protein
LOC_Os03g38940Os.52221.1.S1_at11/113+21585701..21588673expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13241.1.S1_at--592--7552Chr06:14366091..14366110 (20 bp)
GTGGCCCTTGAGTCATTTTTGCTAA
LOC_Os06g24510
OsAffx.13241.1.S1_at--399--4551Chr03:21561580..21561604 (25 bp)
GCCCTTGAGTCATTTTTGCTAAAAA
LOC_Os03g38880
OsAffx.13241.1.S1_at--149--5051NONE
GCAGAAAGGGATACACAAGATCGTT
NONE
OsAffx.13241.1.S1_at--160--2811Chr03:21560920..21560944 (25 bp)
AAGATCGTTGGATATGACCTTGCTC
LOC_Os03g38880
OsAffx.13241.1.S1_at--78--6631Chr03:21560914..21560938 (25 bp)
GTTGGATATGACCTTGCTCGACACC
LOC_Os03g38880
OsAffx.13241.1.S1_at--948--6491Chr03:21560910..21560934 (25 bp)
GATATGACCTTGCTCGACACCAACA
LOC_Os03g38880
OsAffx.13241.1.S1_at--418--3272Chr10:7959411..7959864 (25 bp)
CAACATTTTCATCGAGACATGAGGA
NONE
OsAffx.13241.1.S1_at--583--2411Chr03:21560240..21560264 (25 bp)
AAAAAGCCGCCAGTCCTATTATTCA
LOC_Os03g38880
OsAffx.13241.1.S1_at--327--4171Chr03:21560233..21560257 (25 bp)
CGCCAGTCCTATTATTCACACTCAA
LOC_Os03g38880
OsAffx.13241.1.S1_at--759--4872Chr07:7771847..7771870 (24 bp)
GCTATTCCTAATGTTAATTCTGCTG
LOC_Os07g13560
OsAffx.13241.1.S1_at--946--10491Chr03:21558947..21558967 (21 bp)
TTAAGAATATGGTTGATCTACACCG
LOC_Os03g38880
Target Sequence 
GTGGCCCTTGAGTCATTTTTGCTAAAAAAAAGTGAGAAAAGGCAGAAAGGGATACACAAGATCGTTGGATATGACCTTGC
TCGACACCAACATTTTCATCGAGACATGAGGAATGATCAACATGACCATTATGAGGAAGTAGATAATCATGAAAAGGAGG
AGAGAGACATGAAAAAGCCGCCAGTCCTATTATTCACACTCAAAGTCGAGGCACCTCCATCATCTGAAGAGGGCATCAAA
GAAGAGTTGTGTGATAATGCTTCACTTATATCAATGCCACAACTAGTTAATGAACATGCTATTCCTAATGTTAATTCTGC
TGATTTTAAGAATATGGTTGATCTACACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis