Browse Element(s) Details


OsAffx.13276.1.S1_at

Description tigr:9631.m03935
TID=OsAffx.13276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4093011/11Lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40860OsAffx.25460.1.S1_at11/113+22676530..22676787hypothetical protein
LOC_Os03g40870OsAffx.22722.1.S1_x_at1/113+22677622..22684053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40880OsAffx.20354.1.S1_at5/113+22685239..22687576retrotransposon protein, putative, unclassified
LOC_Os03g40900NANA3+22691305..22691808hypothetical protein
LOC_Os03g40910OsAffx.26001.2.S1_at1/113+22692358..22693179hypothetical protein
LOC_Os03g40920Os.1151.2.S2_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_s_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S2_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_at10/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_x_at10/113+22693876..22697964expressed protein
LOC_Os03g40930OsAffx.13276.1.S1_at11/113+22699652..22701524Lipase, putative, expressed
LOC_Os03g40950OsAffx.13277.1.S1_at11/113+22713060..22713704hypothetical protein
LOC_Os03g40960Os.28943.1.S1_x_at4/113+22721344..22722477retrotransposon protein, putative, unclassified
LOC_Os03g40970NANA3+22723096..22729061retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13276.1.S1_at--582--7331Chr03:22700162..22700186 (25 bp)
GTGCACAGAACCTGAGACCCTTAAG
LOC_Os03g40930
OsAffx.13276.1.S1_at--713--9771Chr03:22700141..22700165 (25 bp)
TAAGGCACGCAGTGAGGGTCTCGCA
LOC_Os03g40930
OsAffx.13276.1.S1_at--453--7171Chr03:22700124..22700148 (25 bp)
GTCTCGCAGAGATCATTAGGCATGT
LOC_Os03g40930
OsAffx.13276.1.S1_at--937--8991Chr03:22700054..22700078 (25 bp)
TGAAGATTCACACCTGACTCGGATC
LOC_Os03g40930
OsAffx.13276.1.S1_at--905--1291Chr03:22700012..22700036 (25 bp)
AGATGCTGTTTACTGGGAGACTACC
LOC_Os03g40930
OsAffx.13276.1.S1_at--1074--711Chr03:22699945..22699969 (25 bp)
ATGATTGCACATTCTGGGCGCTCTG
LOC_Os03g40930
OsAffx.13276.1.S1_at--255--8931Chr03:22699917..22699941 (25 bp)
TGACCCTATTCCGTTTTGGTGAGGT
LOC_Os03g40930
OsAffx.13276.1.S1_at--731--6151Chr03:22699843..22699867 (25 bp)
GAGGTTGCGTTTAATGTCCCTGGTC
LOC_Os03g40930
OsAffx.13276.1.S1_at--590--4271Chr03:22699825..22699849 (25 bp)
CCTGGTCTGTCCATGGATTGTTTCA
LOC_Os03g40930
OsAffx.13276.1.S1_at--376--51Chr03:22699809..22699833 (25 bp)
ATTGTTTCATACCACCCACTGATAT
LOC_Os03g40930
OsAffx.13276.1.S1_at--242--511Chr03:22699710..22699734 (25 bp)
ATCGTGCCAAAGTTGCTGCCTTGGA
LOC_Os03g40930
Target Sequence 
GTGCACAGAACCTGAGACCCTTAAGGCACGCAGTGAGGGTCTCGCAGAGATCATTAGGCATGTTATGTTTGGATATTTCA
GCCAGAGGACTGGCCTTCTTGTCCATATTGAAGATTCACACCTGACTCGGATCCAGTCGACAACCGGAGGAGATGCTGTT
TACTGGGAGACTACCATCAATTCATTCATCGAGGATTATCGTCCAGTGGAAGGTATAATGATTGCACATTCTGGGCGCTC
TGCTGTGACCCTATTCCGTTTTGGTGAGGTGGCCATGAGCCACACCAAGACTCGTATGGAGGAGGCATGGAGCATTGAGG
AGGTTGCGTTTAATGTCCCTGGTCTGTCCATGGATTGTTTCATACCACCCACTGATATCAAGTCTGGATCTATTAGTGAA
ACTGTTGAGCTTTCTCATGGTGAGAAGAGCAAGGTTGGCCCTCCCCCTGGCCATCGTGCCAAAGTTGCTGCCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis