Browse Element(s) Details


OsAffx.13282.1.S1_s_at

Description tigr:9631.m03974
TID=OsAffx.13282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative seed specific protein, 5-partial
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4133011/11LOB domain protein 40, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41290OsAffx.25467.1.S1_at11/113+22913673..22914563hypothetical protein
LOC_Os03g41300OsAffx.3471.1.S1_at7/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.3.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.6.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300Os.37227.1.S1_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41310NANA3+22923863..22924108hypothetical protein
LOC_Os03g41320NANA3+22926099..22926344expressed protein
LOC_Os03g41330OsAffx.13282.1.S1_s_at11/113+22931641..22934544LOB domain protein 40, putative, expressed
LOC_Os03g41339NANA3+22939368..22939835hypothetical protein
LOC_Os03g41350Os.15000.1.S1_a_at11/113+22944780..22951049transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13282.1.S1_s_at--420--8491Chr03:22931954..22931978 (25 bp)
TGGCTGCGGTGCTCCAGTCCTGCGA
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--221--1151Chr03:22931939..22931963 (25 bp)
AGTCCTGCGAGCTGGACCTCTGCCT
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--1062--3991Chr03:22931864..22931888 (25 bp)
CGTCGGACGAGCACTCGACGACGAC
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--370--5791Chr03:22931845..22931869 (25 bp)
GACGACGTGCGAGGAAGCCAGCGAC
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--1107--8971Chr03:22931792..22931816 (25 bp)
TGAACCTCTTCAGCTGATCCTGATC
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--659--3651Chr03:22931785..22931809 (25 bp)
CTTCAGCTGATCCTGATCGATCGAT
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--1056--511Chr03:22931770..22931794 (25 bp)
ATCGATCGATCCAGAGCTGTACGTA
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--472--6351Chr03:22931763..22931787 (25 bp)
GATCCAGAGCTGTACGTACGTAATT
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--885--6992Chr01:11574052..11574072 (21 bp)
GTACGTACGTAATTGTAAGCTAATT
NONE
OsAffx.13282.1.S1_s_at--424--3651Chr03:22931720..22931744 (25 bp)
CTTAATTTGTAGTGGCAACTGTGCA
LOC_Os03g41330
OsAffx.13282.1.S1_s_at--924--6132Chr01:11573675..11574130 (25 bp)
GAGGGTGAGGGTTCAATCGATCGAT
NONE
Target Sequence 
TGGCTGCGGTGCTCCAGTCCTGCGAGCTGGACCTCTGCCTCACGCCCGTCTCACCGCCGGCCGTGCAGCTGGTGGGTGGG
GGCGGCGGCGCGTCGGACGAGCACTCGACGACGACGTGCGAGGAAGCCAGCGACGGGGATGGCGCCGGGGCGCCCACGCT
GCTGAACCTCTTCAGCTGATCCTGATCGATCGATCCAGAGCTGTACGTACGTAATTGTAAGCTAATTAATTATGCTTAAT
TTGTAGTGGCAACTGTGCAGAGAGGGTGAGGGTTCAATCGATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13282.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis