Browse Element(s) Details


Os.15000.1.S1_a_at

Description gb:AK065225.1
DB_XREF= gi:32975243
TID=Os.15000.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G24, full insert sequence.
FL= gb:AK065225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4135011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41300OsAffx.3471.1.S1_at7/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.3.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300OsAffx.29724.6.S1_x_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41300Os.37227.1.S1_at1/113+22915528..22921768hypothetical protein
LOC_Os03g41310NANA3+22923863..22924108hypothetical protein
LOC_Os03g41320NANA3+22926099..22926344expressed protein
LOC_Os03g41330OsAffx.13282.1.S1_s_at11/113+22931641..22934544LOB domain protein 40, putative, expressed
LOC_Os03g41339NANA3+22939368..22939835hypothetical protein
LOC_Os03g41350Os.15000.1.S1_a_at11/113+22944780..22951049transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g41380OsAffx.13284.1.S1_at10/113+22975486..22977528hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15000.1.S1_a_at--308--5671Chr03:22945247..22945271 (25 bp)
GACATCAACAACAAGAGCTGTGACG
LOC_Os03g41350
Os.15000.1.S1_a_at--844--2851Chr03:22945208..22945232 (25 bp)
AAGTCCAAGGGATCGCTCATGCCCA
LOC_Os03g41350
Os.15000.1.S1_a_at--212--1071Chr03:22945201..22945225 (25 bp)
AGGGATCGCTCATGCCCAAGAAGAT
LOC_Os03g41350
Os.15000.1.S1_a_at--889--9611Chr03:22945192..22945216 (25 bp)
TCATGCCCAAGAAGATCCTGAGCAA
LOC_Os03g41350
Os.15000.1.S1_a_at--846--3851Chr03:22945175..22945199 (25 bp)
CTGAGCAAGCTCTGGTCCGGGAAAA
LOC_Os03g41350
Os.15000.1.S1_a_at--387--8331Chr03:22945057..22945081 (25 bp)
GGCGTTTGGTAACCTAGTGTCAACA
LOC_Os03g41350
Os.15000.1.S1_a_at--669--8551Chr03:22945051..22945075 (25 bp)
TGGTAACCTAGTGTCAACAGAGCCA
LOC_Os03g41350
Os.15000.1.S1_a_at--856--10031Chr03:22944962..22944986 (25 bp)
TAGTACTAGCAATCTTTAGAATGTG
LOC_Os03g41350
Os.15000.1.S1_a_at--1059--31Chr03:22944862..22944886 (25 bp)
ATAGGTTTGGTCATCGGTAAATTTG
LOC_Os03g41350
Os.15000.1.S1_a_at--908--7031Chr03:22944853..22944877 (25 bp)
GTCATCGGTAAATTTGTTCAGGAAC
LOC_Os03g41350
Os.15000.1.S1_a_at--85--3491Chr03:22944835..22944859 (25 bp)
CAGGAACGTTTCATGATATAGTCTT
LOC_Os03g41350
Target Sequence 
GACATCAACAACAAGAGCTGTGACGANCAAGAGCTCCAGCNAAGTCCAAGGGATCGCTCATGCCCAAGAAGATCCTGAGC
AAGCTCTGGTCCGGGAAAACNAACGCCAGCGAGANCAGTAGCTCGGACACGTCGGAGAGCCCNTGGGTCACTCAACCCGG
AGGAGGTGAAGTCCACAACGTCCAGGAATACANAGGCGTTTGGTAACCTAGTGTCAACAGAGCCANGCCNANTGGTTTTT
GTTTTTGTTTCTTTTTTGGCTTTGATTTNGCCTTCANGATGAGATAAAAAAAAGTAGTACTAGCAATCTTTAGAATGTGG
AATACTACTGACTGNNAGTCCCTCCGATGNNAGATAGTGTTTTTTATAGCANTTGTTATTATGCTGGCATTTGCTATAGG
TTTGGTCATCGGTAAATTTGTTCAGGAACGTTTCATGATATAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15000.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis