Browse Element(s) Details


OsAffx.13284.1.S1_at

Description tigr:9631.m03978
TID=OsAffx.13284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4138010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41350Os.15000.1.S1_a_at11/113+22944780..22951049transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g41380OsAffx.13284.1.S1_at10/113+22975486..22977528hypothetical protein
LOC_Os03g41390Os.49588.1.S1_at11/113+22991100..22991972Zinc finger, C2H2 type family protein, expressed
LOC_Os03g41394OsAffx.22898.1.S1_at1/113+22995114..22995891NA
LOC_Os03g41400NANA3+23000000..23001550hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13284.1.S1_at--627--8171NONE
GGAACATCAGGTTTTGTCTAGGTCT
NONE
OsAffx.13284.1.S1_at--717--8711Chr03:22976829..22976853 (25 bp)
TGTCTAGGTCTACGAACTTCCAAAA
LOC_Os03g41380
OsAffx.13284.1.S1_at--647--1031Chr03:22976863..22976887 (25 bp)
AGGTCTCTATACTTACTTTATCATA
LOC_Os03g41380
OsAffx.13284.1.S1_at--456--10171Chr03:22976886..22977032 (25 bp)
TATCATTGCCTATGTGCCACTGCCT
LOC_Os03g41380
OsAffx.13284.1.S1_at--859--7631Chr03:22977182..22977206 (25 bp)
GGGAGAGATCCTCTGTAGCCACAGC
LOC_Os03g41380
OsAffx.13284.1.S1_at--9--4551Chr03:22977221..22977245 (25 bp)
GCCCTCCTTTGGCTGCTGGCAAAGA
LOC_Os03g41380
OsAffx.13284.1.S1_at--418--1331Chr03:22977243..22977267 (25 bp)
AGAGGTAGATCCAGCGAAGAGGCAA
LOC_Os03g41380
OsAffx.13284.1.S1_at--29--8111Chr03:22977344..22977368 (25 bp)
GGACCTCAAGCTACGGCAGCCATGG
LOC_Os03g41380
OsAffx.13284.1.S1_at--546--4611Chr03:22977407..22977431 (25 bp)
GCGAGCAACAATCGCTCCGCGTCAT
LOC_Os03g41380
OsAffx.13284.1.S1_at--852--411Chr03:22977430..22977454 (25 bp)
ATCTCTCCGCTTAGGGTCGTCGTTG
LOC_Os03g41380
OsAffx.13284.1.S1_at--1147--9391Chr03:22977446..22977470 (25 bp)
TCGTCGTTGTTCATCTCCGCAAGCT
LOC_Os03g41380
Target Sequence 
GGAACATCAGGTTTTGTCTAGGTCTACGAACTTCCAAAACATGTATCAAGGTCTCTATACTTACTTTATCATATCATTGC
CTATGTGCCACTGCCTACCTCTGCTACGGCGCTTCCACCGCAACATCCTCTGCCTCACTGCCGCAACCACCACCTGCAGT
TGCGTCTTCCACGCCGCCACCACCATCTCCGCCTCCTTCTCTCCCTCGCCGCGGCCTGCTGCTGCTTCGGGAAAGGCGGG
GATGAGGGAGAGATCCTCTGTAGCCACAGCCGGCTCCTTCGCGCGCCCTCCTTTGGCTGCTGGCAAAGAGGTAGATCCAG
CGAAGAGGCAAATCCTACAAAGAGGCAGAGGAGAGGAGGAGGCACAGATCCACGGTGCAAGAGGAGTGGAAGGTTGTCTG
GGGATTAGGACCTCAAGCTACGGCAGCCATGGCGCTGCCCTATTCCTCCCACCATGGTGCCACTCCGTCCGCGAGCAACA
ATCGCTCCGCGTCATCTCTCCGCTTAGGGTCGTCGTTGTTCATCTCCGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis