Browse Element(s) Details


OsAffx.22898.1.S1_at

Description gb:NM_183734.1
DB_XREF= gi:34894595
GEN=B1012D10.20
TID=OsAffx.22898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1012D10.20 (B1012D10.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g413941/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41380OsAffx.13284.1.S1_at10/113+22975486..22977528hypothetical protein
LOC_Os03g41390Os.49588.1.S1_at11/113+22991100..22991972Zinc finger, C2H2 type family protein, expressed
LOC_Os03g41394OsAffx.22898.1.S1_at1/113+22995114..22995891NA
LOC_Os03g41400NANA3+23000000..23001550hypothetical protein
LOC_Os03g41419OsAffx.3473.1.S1_x_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41419Os.50445.1.S1_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22898.1.S1_at--947--2631Chr01:11924133..11924157 (25 bp)
AACCTAGTATTTTGATGCAGCAGCT
NONE
OsAffx.22898.1.S1_at--907--5051Chr01:11924152..11924176 (25 bp)
GCAGCTTAGCTTAGTATGTACCGTT
NONE
OsAffx.22898.1.S1_at--838--6331Chr01:11924340..11924364 (25 bp)
GATGCGTATTTGGTTAGTCGTCTAA
NONE
OsAffx.22898.1.S1_at--1134--1051Chr01:11924355..11924379 (25 bp)
AGTCGTCTAACACAACCGTTGAAGT
NONE
OsAffx.22898.1.S1_at--811--10511Chr01:11924404..11924428 (25 bp)
TTCACGGGACCAATGCTGCGTCAAA
NONE
OsAffx.22898.1.S1_at--636--9111NONE
TGCTGCGTCAAACTCTTTGGGCCGA
NONE
OsAffx.22898.1.S1_at--391--10851Chr01:11925025..11925049 (25 bp)
TTGGCCACTATTTGTCAACGACTTT
NONE
OsAffx.22898.1.S1_at--288--2771Chr01:11925051..11925075 (25 bp)
AAGACCCAATCTAGCAACCCAATGG
NONE
OsAffx.22898.1.S1_at--3--411Chr01:11925891..11925915 (25 bp)
ATCAGCTTTGATGGCTTCATCTCAG
NONE
OsAffx.22898.1.S1_at--456--3473Chr04:2666603..2666744 (25 bp)
CAGGTCAGTTAGATCAATTCCACAT
NONE
OsAffx.22898.1.S1_at--338--3151Chr01:11925928..11925952 (25 bp)
AATTCCACATTGTTGTCGAACGACA
NONE
Target Sequence 
AACCTAGTATTTTGATGCAGCAGCTTAGCTTAGTATGTACCGTTTTGGTCAATGAGTGGCATGATGCGTATTTGGTTAGT
CGTCTAACACAACCGTTGAAGTGTAAGCCAGAGGAAAAGTTTGCCCTTCACGGGACCAATGCTGCGTCAAACTCTTTGGG
CCGACACACGTTGGGCCAAGCGACAAGGCAACTCCCGCCATGGACCGAGTCTGACTCCTTCCAAAGGAAGGTTGGCCACT
ATTTGTCAACGACTTTCAAGACCCAATCTAGCAACCCAATGGCAAGGGAGATGTGTGCCGGGGTGGAGGGGACGGATTGC
ACCAAGGCACTGGAAGGGGTTCATGAGGTATCTCACAATAGAAGAAATGGAGAAGAGAAGAAGGAAAAGCGAAAACCAAA
TATCAGCTTTGATGGCTTCATCTCAGGTCAGTTAGATCAATTCCACATTGTTGTCGAACGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis