Browse Element(s) Details


Os.50445.1.S1_at

Description gb:AK121227.1
DB_XREF= gi:37990850
TID=Os.50445.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091I18, full insert sequence.
FL= gb:AK121227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4141911/11Serpin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41390Os.49588.1.S1_at11/113+22991100..22991972Zinc finger, C2H2 type family protein, expressed
LOC_Os03g41394OsAffx.22898.1.S1_at1/113+22995114..22995891NA
LOC_Os03g41400NANA3+23000000..23001550hypothetical protein
LOC_Os03g41419OsAffx.3473.1.S1_x_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41419Os.50445.1.S1_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50445.1.S1_at--510--9891Chr03:23007964..23007988 (25 bp)
TACTTGCTGTATAGAGCGTTTGCCT
LOC_Os03g41419
Os.50445.1.S1_at--77--6891Chr03:23007972..23007996 (25 bp)
GTATAGAGCGTTTGCCTGTAAATCG
LOC_Os03g41419
Os.50445.1.S1_at--505--6851Chr03:23007981..23008005 (25 bp)
GTTTGCCTGTAAATCGCTGTGTAGT
LOC_Os03g41419
Os.50445.1.S1_at--933--9831Chr03:23007990..23008014 (25 bp)
TAAATCGCTGTGTAGTGGTGCGGCC
LOC_Os03g41419
Os.50445.1.S1_at--369--8611Chr03:23008005..23008029 (25 bp)
TGGTGCGGCCGCATCTGTGATCTGT
LOC_Os03g41419
Os.50445.1.S1_at--559--8411Chr03:23008011..23008035 (25 bp)
GGCCGCATCTGTGATCTGTCGTATG
LOC_Os03g41419
Os.50445.1.S1_at--436--8671Chr03:23008020..23008044 (25 bp)
TGTGATCTGTCGTATGCAACTGCTG
LOC_Os03g41419
Os.50445.1.S1_at--412--10131Chr03:23008032..23008056 (25 bp)
TATGCAACTGCTGGGTTTGATGAAC
LOC_Os03g41419
Os.50445.1.S1_at--475--2512Chr03:23008054..23008078 (25 bp)
AACATTTGATCATGCTGACTTCACA
LOC_Os03g41419
Os.50445.1.S1_at--348--6431Chr03:23008061..23008085 (25 bp)
GATCATGCTGACTTCACAATAAATA
LOC_Os03g41419
Os.50445.1.S1_at--1120--251Chr03:23008083..23008107 (25 bp)
ATATGACAAATGTGGCCTGTTTCTG
LOC_Os03g41419
Target Sequence 
TACTTGCTGTATAGAGCGTTTGCCTGTAAATCGCTGTGTAGTGGTGCGGCCGCATCTGTGATCTGTCGTATGCAACTGCT
GGGTTTGATGAACATTTGATCATGCTGACTTCACAATAAATATGACAAATGTGGCCTGTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis