Browse Element(s) Details


Os.49588.1.S1_at

Description gb:AY305868.1
DB_XREF= gi:32172485
GEN=ZFP31
TID=Os.49588.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49588 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP31 (ZFP31) mRNA, complete cds.
PROD=C2H2 type zinc finger transcription factorZFP31
FL= gb:AY305868.1 gb:AY289189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4139011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41380OsAffx.13284.1.S1_at10/113+22975486..22977528hypothetical protein
LOC_Os03g41390Os.49588.1.S1_at11/113+22991100..22991972Zinc finger, C2H2 type family protein, expressed
LOC_Os03g41394OsAffx.22898.1.S1_at1/113+22995114..22995891NA
LOC_Os03g41400NANA3+23000000..23001550hypothetical protein
LOC_Os03g41419OsAffx.3473.1.S1_x_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41419Os.50445.1.S1_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49588.1.S1_at--430--4532Chr10:15038862..15039176 (25 bp)
GCCGCCTCACGGTTCGGAGGAGGAG
NONE
Os.49588.1.S1_at--232--1511Chr03:22991569..22991593 (25 bp)
AGCACGGGTGCTCCGTGTGCGGCAG
LOC_Os03g41390
Os.49588.1.S1_at--194--8691Chr03:22991554..22991578 (25 bp)
TGTGCGGCAGGGTGTTCTCGTCCTA
LOC_Os03g41390
Os.49588.1.S1_at--1083--1051Chr03:22991546..22991570 (25 bp)
AGGGTGTTCTCGTCCTACCAGGCGC
LOC_Os03g41390
Os.49588.1.S1_at--251--4791Chr03:22991362..22991386 (25 bp)
GCTCCGTGTGCAAGAAGACGTTCCC
LOC_Os03g41390
Os.49588.1.S1_at--402--7451Chr03:22991357..22991381 (25 bp)
GTGTGCAAGAAGACGTTCCCGACGG
LOC_Os03g41390
Os.49588.1.S1_at--174--4491Chr03:22991261..22991285 (25 bp)
GCCGGCCGCGGGTTCGATCTGAACC
LOC_Os03g41390
Os.49588.1.S1_at--885--4571Chr03:22991225..22991249 (25 bp)
GCGCTGCCGGACATCATGACGGAGC
LOC_Os03g41390
Os.49588.1.S1_at--689--2091Chr03:22991215..22991239 (25 bp)
ACATCATGACGGAGCGGTGCTTGCC
LOC_Os03g41390
Os.49588.1.S1_at--247--5431Chr03:22991142..22991166 (25 bp)
GAAGCCAAGGCTAATGATCCCTGCT
LOC_Os03g41390
Os.49588.1.S1_at--1091--2931Chr03:22991136..22991160 (25 bp)
AAGGCTAATGATCCCTGCTTAATTA
LOC_Os03g41390
Target Sequence 
GCCGCCTCACGGTTCGGAGGAGGAGCACCTCGCGCTCAGCCTCCTCATGCTGGCGCGCGGCCACCGCGACCCCTCGCCGG
CGCCGCAGGAGCAGCACGGGTGCTCCGTGTGCGGCAGGGTGTTCTCGTCCTACCAGGCGCTCGGCGGCCACAAGACGAGC
CACCGCCCCAGGACGCCGCCGACGATGGCGGCCGTTGTCGTCGTANACGAGCCGGCNGCGACGACGGCCTCGCCGGCCGC
GTCCTCGTCCAATTCCGGCTCCGGCAGCGGCGGCGGCGGCGGAAACAAGGTGCACGAGTGCTCCGTGTGCAAGAAGACGT
TCCCGACGGGGCAGGCGCTGGGCGGGCACAAGCGGTGCCACTACGANGGCCCGATCGGAAGCGGCGGCGGCGCCGCTGTC
GCCGGCCGCGGGTTCGATCTGAACCTGCCGGCGGTGGCGCTGCCGGACATCATGACGGAGCGGTGCTTGCCGGCGGCGGC
CGAGGAGGAGGAGGTGCTCAGCCCGCTTGCNAGCTTCAAGAAGCCAAGGCTAATGATCCCTGCTTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis