Browse Element(s) Details


OsAffx.13312.1.S1_s_at

Description tigr:9631.m04122
TID=OsAffx.13312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative inositol polyphosphate 5-phosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4281011/11Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42790Os.50106.1.S1_at11/113+23790357..23793881IBR domain containing protein, expressed
LOC_Os03g42810OsAffx.13312.1.S1_s_at11/113+23803324..23806384Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed
LOC_Os03g42820Os.8892.1.S1_at11/113+23809481..23816235LIM domain-containing protein, putative, expressed
LOC_Os03g42830Os.5343.1.S1_at10/113+23824483..23830601MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13312.1.S1_s_at--394--1331Chr03:23805628..23805652 (25 bp)
AGAGGAACTCAGAATGCCAGCACAT
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--849--1471Chr03:23805638..23805662 (25 bp)
AGAATGCCAGCACATTTCACACTCA
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--605--10511Chr03:23805653..23805677 (25 bp)
TTCACACTCACTGTTCTCCAAGAAT
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--661--2271Chr03:23805693..23805717 (25 bp)
AAATCTGCAGACATAACGGTGTGGC
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--178--2571Chr03:23805707..23805731 (25 bp)
AACGGTGTGGCTTGGTGACTTGAAT
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--1056--2891Chr03:23806148..23806172 (25 bp)
AAGGTTGACCACACTTCTGGCTTGG
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--1137--9451Chr03:23806163..23806187 (25 bp)
TCTGGCTTGGATGCGGTCTTAAACT
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--187--7731Chr03:23806177..23806201 (25 bp)
GGTCTTAAACTCATACGAAGCACTT
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--505--10091Chr03:23806210..23806234 (25 bp)
TAGGAGTTCTGATCACAAGCCTGTG
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--1089--7371Chr03:23806232..23806256 (25 bp)
GTGAGAGCCCATCTTTGTCTGAAAG
LOC_Os03g42810
OsAffx.13312.1.S1_s_at--821--5651Chr03:23806265..23806289 (25 bp)
GACAGTGCATAGATAGACATTTCCA
LOC_Os03g42810
Target Sequence 
AGAGGAACTCAGAATGCCAGCACATTTCACACTCACTGTTCTCCAAGAATGATATACAGTATACTAAATCTGCAGACATA
ACGGTGTGGCTTGGTGACTTGAATTACAGACTACAGGGAATAAGCTCAATACCAGCAAGGAAGTTGATTGAAGAGAATCG
TCAAAGTAAGCTAAGAGGCAAAGACCAGCTTCTGCAAGAAGCTGAAAAGGGTGAAGTATTCAATGGGTACTGCGAAGGGA
CCTTGTTGTTTAAGCCAACGTACAAGTATAACATAGGGAGTAGCAACTACGATACAAGTTATAAGATCAGAGTTCCTTCT
TGGACAGATAGGATATTATTCAAGGTTGACCACACTTCTGGCTTGGATGCGGTCTTAAACTCATACGAAGCACTTGATTG
CATTAGGAGTTCTGATCACAAGCCTGTGAGAGCCCATCTTTGTCTGAAAGTACATGGTGACAGTGCATAGATAGACATTT
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13312.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis