Browse Element(s) Details


OsAffx.13351.1.S1_at

Description tigr:9631.m04332
TID=OsAffx.13351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44760Os.49442.2.S1_x_at11/113+25188247..25194395meiosis protein, putative, expressed
LOC_Os03g44760OsAffx.16734.1.S1_at1/113+25188247..25194395meiosis protein, putative, expressed
LOC_Os03g44780Os.54150.1.S1_at11/113+25205168..25208480elongation factor Tu family protein, putative, expressed
LOC_Os03g44800OsAffx.13351.1.S1_at11/113+25218463..25222121expressed protein
LOC_Os03g44810Os.54281.1.S1_at11/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44810OsAffx.29100.1.S1_at1/113+25222398..25227209SPX domain containing protein, expressed
LOC_Os03g44820Os.8552.1.S1_at10/113+25230628..25232697glutamyl-tRNA amidotransferase, C subunit family protein, expressed
LOC_Os03g44830Os.18753.1.S1_at11/113+25233636..25240504expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13351.1.S1_at--366--9271Chr03:25219640..25219664 (25 bp)
TCCTCCGGGAGATTGCACAGCAGCT
LOC_Os03g44800
OsAffx.13351.1.S1_at--316--9991Chr03:25219664..25219688 (25 bp)
TAGCCAAGGATGCTACTCCAGCTAA
LOC_Os03g44800
OsAffx.13351.1.S1_at--21--3271Chr03:25219712..25219736 (25 bp)
CAACTGTGCACCATTTTCCTGGAAA
LOC_Os03g44800
OsAffx.13351.1.S1_at--982--8471Chr03:25219781..25219805 (25 bp)
TGGCGATTGCCAAGAGACTCTCCAT
LOC_Os03g44800
OsAffx.13351.1.S1_at--690--51Chr03:25221468..25221492 (25 bp)
ATTGTTGCTTTATTTCGCTCTCAGA
LOC_Os03g44800
OsAffx.13351.1.S1_at--193--1031Chr03:25221594..25221618 (25 bp)
AGGTACACATTTGGTCTATCTGGCA
LOC_Os03g44800
OsAffx.13351.1.S1_at--637--2451Chr03:25221618..25221642 (25 bp)
AACAATGTCGGCTTGCTAGTACTCC
LOC_Os03g44800
OsAffx.13351.1.S1_at--861--6971Chr03:25221650..25221674 (25 bp)
GTACCCGCGGATTCAGAAAACTCTC
LOC_Os03g44800
OsAffx.13351.1.S1_at--704--7431Chr03:25221835..25221859 (25 bp)
GTGTTTCCTTGATTCTTTTACCGAT
LOC_Os03g44800
OsAffx.13351.1.S1_at--1142--731Chr03:25221858..25221882 (25 bp)
ATGTTTTTCGCTTTGTCAGTCACCA
LOC_Os03g44800
OsAffx.13351.1.S1_at--870--8171Chr03:25221896..25221920 (25 bp)
GGAAGGTTATTGCTTTAATCCTGTG
LOC_Os03g44800
Target Sequence 
TCCTCCGGGAGATTGCACAGCAGCTAGCCAAGGATGCTACTCCAGCTAACACAGGAGGATTTGGGGTGGTGCCAACTGTG
CACCATTTTCCTGGAAAGCAAGATGGGTTCAGAGATCAGAGGTTTCGGGAAAACAGGAAGATGGCGATTGCCAAGAGACT
CTCCATGGTTGCGTTGTGTAAGTGGATTGTTGCTTTATTTCGCTCTCAGAAAAGGAACCCATCACAAAGCAGGTACACAT
TTGGTCTATCTGGCAACAATGTCGGCTTGCTAGTACTCCTGGACAAGTACCCGCGGATTCAGAAAACTCTCACAAGAAGA
AAGTAAAAAACGCGGATTCCGAAAAATCTCACAAGAAGAAAGTAAAAAACCTTACTGGAGGAGCAACTGCTGTTCAGTGT
AAATAAAAATAGCCATCGGTTGGGGAGTTTGCTTGTAATGGCATTCTTTATTTAAAGGTTGGGTGGAGCAAGTGTTTCCT
TGATTCTTTTACCGATGTTTTTCGCTTTGTCAGTCACCAGCACAGGAAATGCGGAAGGTTATTGCTTTAATCCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis