Browse Element(s) Details


OsAffx.13413.1.S1_at

Description tigr:9631.m04743
TID=OsAffx.13413.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4872010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48710Os.27383.2.S1_at10/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27383.2.S1_x_at9/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27235.2.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48710Os.30055.1.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48720OsAffx.13413.1.S1_at10/113+27717552..27718624hypothetical protein
LOC_Os03g48730OsAffx.13414.1.S1_at11/113+27721532..27721801hypothetical protein
LOC_Os03g48740NANA3+27724513..27727600Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os03g48750Os.54370.1.S1_at11/113+27728273..27729269Oxalate oxidase GF-2.8 precursor, putative, expressed
LOC_Os03g48760NANA3+27733065..27733754Oxalate oxidase GF-2.8 precursor, putative
LOC_Os03g48770Os.12106.1.S1_at1/113+27737404..27738087Oxalate oxidase 2 precursor, putative
LOC_Os03g48780Os.12106.1.S1_at11/113+27740207..27741221Oxalate oxidase 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13413.1.S1_at--295--1711NONE
ACCACTATCCCTCAGGCGGGTTTGA
NONE
OsAffx.13413.1.S1_at--1040--891Chr03:27718326..27718350 (25 bp)
AGGCGGGTTTGATTCATCTCCCCAT
LOC_Os03g48720
OsAffx.13413.1.S1_at--130--9611Chr03:27718339..27718363 (25 bp)
TCATCTCCCCATCAATGGGACAGGT
LOC_Os03g48720
OsAffx.13413.1.S1_at--420--9631Chr03:27718422..27718446 (25 bp)
TCATGGACGCGGTGGCCCTCAACAG
LOC_Os03g48720
OsAffx.13413.1.S1_at--911--7531Chr03:27718433..27718457 (25 bp)
GTGGCCCTCAACAGCGAGCTCCTGG
LOC_Os03g48720
OsAffx.13413.1.S1_at--228--5891Chr03:27718448..27718472 (25 bp)
GAGCTCCTGGATGTCGGGTTGTCGA
LOC_Os03g48720
OsAffx.13413.1.S1_at--451--1071Chr03:27718472..27718496 (25 bp)
AGGGAGCCAGGCAATCGATGGAAAT
LOC_Os03g48720
OsAffx.13413.1.S1_at--684--2291Chr03:27718493..27718517 (25 bp)
AAATGGTGCATTAGGAGACGAGTCC
LOC_Os03g48720
OsAffx.13413.1.S1_at--543--8011Chr03:27718519..27718543 (25 bp)
GGAGGCAGCGGCTCCCACATGCGAA
LOC_Os03g48720
OsAffx.13413.1.S1_at--809--4792Chr03:27718529..27718553 (25 bp)
GCTCCCACATGCGAAGACGTCGAGA
LOC_Os03g48720
OsAffx.13413.1.S1_at--593--8491Chr03:27718567..27718591 (25 bp)
TGGCAATCGTGTAAGGCGGAAGCAA
LOC_Os03g48720
Target Sequence 
ACCACTATCCCTCAGGCGGGTTTGATTCATCTCCCCATCAATGGGACAGGTCATAGGCAGCGGTTGGTTCGAGAGGAGGC
GGCGGCAGGGCTCCGATGGGGCGGAGGCCTCATGGACGCGGTGGCCCTCAACAGCGAGCTCCTGGATGTCGGGTTGTCGA
GGGAGCCAGGCAATCGATGGAAATGGTGCATTAGGAGACGAGTCCTGGAGGCAGCGGCTCCCACATGCGAAGACGTCGAG
AAAGCAGGCGGTGGTGGCAATCGTGTAAGGCGGAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis