Browse Element(s) Details


OsAffx.13425.1.S1_at

Description tigr:9631.m04848
TID=OsAffx.13425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4969011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49640Os.14595.1.S1_at11/113+28218775..28224883Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g49650NANA3+28228066..28228527retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49660NANA3+28229639..28234007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49680OsAffx.25645.1.S1_at11/113+28241608..28243106hypothetical protein
LOC_Os03g49690OsAffx.13425.1.S1_at11/113+28243700..28244656hypothetical protein
LOC_Os03g49700Os.47931.1.A1_at11/113+28246320..28249464Gtk16 protein, putative, expressed
LOC_Os03g49710Os.14353.1.S1_s_at11/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49710OsAffx.25646.1.S1_at10/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49720Os.11854.1.S1_at10/113+28254159..28257104plastid-lipid associated protein PAP, putative, expressed
LOC_Os03g49730Os.9642.1.S1_at11/113+28257536..28261285MYND finger family protein, expressed
LOC_Os03g49740OsAffx.25647.2.S1_at11/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_x_at4/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_at3/113+28262020..28262777hypothetical protein
LOC_Os03g49750Os.54016.1.S1_at11/113+28263470..28269081protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13425.1.S1_at--726--2151Chr03:28244133..28244157 (25 bp)
ACAGCGTGGCGGTGGACATTAGCAC
LOC_Os03g49690
OsAffx.13425.1.S1_at--272--1831Chr03:28244163..28244187 (25 bp)
ACGCCTGGATGACGAGACTACCGAA
LOC_Os03g49690
OsAffx.13425.1.S1_at--871--1291Chr03:28244226..28244250 (25 bp)
AGATGCTCGTTCTGGCAACGGCAGC
LOC_Os03g49690
OsAffx.13425.1.S1_at--1102--871Chr03:28244367..28244391 (25 bp)
AGGCGAGATGGGTTCTTTCACGGTC
LOC_Os03g49690
OsAffx.13425.1.S1_at--287--10511Chr03:28244383..28244407 (25 bp)
TTCACGGTCTTTTGACGTCCGGAAG
LOC_Os03g49690
OsAffx.13425.1.S1_at--293--5931Chr03:28244414..28244438 (25 bp)
GAGCATGCTGGTCTGGCACATTTTC
LOC_Os03g49690
OsAffx.13425.1.S1_at--1017--5111Chr03:28244429..28244453 (25 bp)
GCACATTTTCGACCGGAGCACAAAG
LOC_Os03g49690
OsAffx.13425.1.S1_at--9--10451Chr03:28244472..28244496 (25 bp)
TTAGATTGGAGTGGTTCTGCCGCAG
LOC_Os03g49690
OsAffx.13425.1.S1_at--164--3831Chr03:28244503..28244527 (25 bp)
CTGCGTGGTTATCTGGGTTCCGTAC
LOC_Os03g49690
OsAffx.13425.1.S1_at--296--9411Chr03:28244529..28244553 (25 bp)
TCGGGTTGTTTGTTCTTGACCTGGA
LOC_Os03g49690
OsAffx.13425.1.S1_at--1049--3411Chr03:28244588..28244612 (25 bp)
CAGACACATGTTTGGCCCTATGAGA
LOC_Os03g49690
Target Sequence 
ACAGCGTGGCGGTGGACATTAGCACGGGCCACGCCTGGATGACGAGACTACCGAAGCAGTGCGTGATGAGCAGTGACAAC
GTATCAAACAACAAGATGCTCGTTCTGGCAACGGCAGCTGATGGGCGGCTCGCCCTTCTCCGGAGGGAGGATGCATGCAC
GAAGGTGACGATATGGGTACACGCTGAAGAAGACAGTGGCCGTGGTAGTTGTGGCAGCGACGGCGACGACGGCGAGGCGA
GATGGGTTCTTTCACGGTCTTTTGACGTCCGGAAGCTCGTCGAGCATGCTGGTCTGGCACATTTTCGACCGGAGCACAAA
GATTGGGCAGATTTGGAGGTTAGATTGGAGTGGTTCTGCCGCAGGAGCCGCTGCGTGGTTATCTGGGTTCCGTACCTCGG
GTTGTTTGTTCTTGACCTGGAGAACATGCAGATGCAGAGAGCTGCTGGGGATAGCCAGACACATGTTTGGCCCTATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis