Browse Element(s) Details


OsAffx.13437.1.S1_at

Description tigr:9631.m04910
TID=OsAffx.13437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5028010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50210Os.22831.1.S1_at11/113+28580817..28582548expressed protein
LOC_Os03g50220Os.52754.2.S1_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50220Os.52754.1.S1_x_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50230NANA3+28587672..28592810Protein kinase domain containing protein, expressed
LOC_Os03g50240OsAffx.30187.3.S1_at3/113+28594290..28594523hypothetical protein
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein
LOC_Os03g50280OsAffx.13437.1.S1_at10/113+28604454..28606583expressed protein
LOC_Os03g50290Os.2673.1.S1_at11/113+28612940..2861712414-3-3-like protein S94, putative, expressed
LOC_Os03g50300Os.25254.1.A1_at11/113+28620469..28628207expressed protein
LOC_Os03g50300Os.25254.2.S1_at11/113+28620469..28628207expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0010175molecular_functionsphingosine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13437.1.S1_at--513--371Chr03:28605417..28605441 (25 bp)
ATCAAGGTTCTCTTCGAGCAGTTCC
LOC_Os03g50280
OsAffx.13437.1.S1_at--432--9491NONE
TCTCCACCCAGGAATGTTCGCTGTA
NONE
OsAffx.13437.1.S1_at--747--10631Chr03:28605028..28605052 (25 bp)
TTCGCTGTATGATGCTGCTACGACA
LOC_Os03g50280
OsAffx.13437.1.S1_at--696--4851Chr03:28605012..28605036 (25 bp)
GCTACGACAGCTTACGGGCAGGTTT
LOC_Os03g50280
OsAffx.13437.1.S1_at--727--4031Chr03:28604981..28605005 (25 bp)
CGTTTCACAGCTGGGCGGTCAGGAA
LOC_Os03g50280
OsAffx.13437.1.S1_at--98--7791Chr03:28604949..28604973 (25 bp)
GGTGCTGGGATGTACACTCTTCCAA
LOC_Os03g50280
OsAffx.13437.1.S1_at--750--1851Chr03:28604776..28604921 (25 bp)
ACGAAACTGATTGCTCCGTGCAGAA
LOC_Os03g50280
OsAffx.13437.1.S1_at--786--971Chr03:28604744..28604768 (25 bp)
AGGAGATACATCGATGCCTCTAGCC
LOC_Os03g50280
OsAffx.13437.1.S1_at--763--291Chr03:28604714..28604738 (25 bp)
ATAGACTACATCGACAACCTTTTCC
LOC_Os03g50280
OsAffx.13437.1.S1_at--785--2351Chr03:28604626..28604650 (25 bp)
AAAGCTGTCGTTGATGCCATTGTTT
LOC_Os03g50280
OsAffx.13437.1.S1_at--58--9331Chr03:28604539..28604563 (25 bp)
TCCCTTCGCAGAGTCATGTGTAATG
LOC_Os03g50280
Target Sequence 
ATCAAGGTTCTCTTCGAGCAGTTCCTCTCCACCCAGGAATGTTCGCTGTATGATGCTGCTACGACAGCTTACGGGCAGGT
TTGCGCGCCGTTTCACAGCTGGGCGGTCAGGAAGGCTGTTGGTGCTGGGATGTACACTCTTCCAAGCAGGGAGCAGCTGA
TCGTGAGGCTCAACGAAACTGATTGCTCCGTGCAGAAGGAGATGAGGAGATACATCGATGCCTCTAGCCCTATCATAGAC
TACATCGACAACCTTTTCCTCTCGAGGAGCATTAGCCTAGACTGGTGAAACTGAACTGGAGTTCATATTTGCAGCTGCTG
ACAAAGCTGTCGTTGATGCCATTGTTTTGTTCTTTTCATAGCTATTATGTAGCCTTGGGTGTGGTTGTCTGGTGGATGCT
CACCCTGACTCCCTTCGCAGAGTCATGTGTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis