Browse Element(s) Details


OsAffx.13479.1.S1_at

Description tigr:9631.m05237
TID=OsAffx.13479.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative receptor-associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5340011/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53360Os.6682.1.A1_s_at11/113+30564358..30566565Transferase family protein, expressed
LOC_Os03g53380NANA3+30575593..30576692hypothetical protein
LOC_Os03g53390OsAffx.3602.1.S1_at11/113+30583281..30586758expressed protein
LOC_Os03g53390Os.6727.1.S1_at1/113+30583281..30586758expressed protein
LOC_Os03g53400OsAffx.13479.1.S1_at11/113+30589588..30590374Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g53410OsAffx.25701.1.S1_at11/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.12223.2.S1_at6/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.46332.1.A1_at1/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53419OsAffx.16630.1.S1_at1/113+30595929..30596609hypothetical protein
LOC_Os03g53430OsAffx.20729.1.S1_x_at3/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53430OsAffx.1674.1.S1_at1/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53440NANA3+30610275..30611063hypothetical protein
LOC_Os03g53450OsAffx.25702.1.S1_at11/113+30612242..30613469hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016595molecular_functionglutamate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13479.1.S1_at--302--8931Chr03:30589896..30589920 (25 bp)
TGCTTTGCCCGCTCTACTACTACTA
LOC_Os03g53400
OsAffx.13479.1.S1_at--402--6151Chr03:30590012..30590036 (25 bp)
GAGGTGATCCTCGAGTCGGCGATCC
LOC_Os03g53400
OsAffx.13479.1.S1_at--488--7491Chr03:30590048..30590072 (25 bp)
GTGGTGGTGAGCCTGACGGCGTACA
LOC_Os03g53400
OsAffx.13479.1.S1_at--91--1951Chr03:30590063..30590087 (25 bp)
ACGGCGTACACGTTCTGGGCGGCGC
LOC_Os03g53400
OsAffx.13479.1.S1_at--263--8811Chr03:30590151..30590175 (25 bp)
TGTTCGCGCTCATCCAGGTCTTCTT
LOC_Os03g53400
OsAffx.13479.1.S1_at--386--3791Chr03:30590180..30590204 (25 bp)
CTCGGGAGGGTCTCGCTGATGATCT
LOC_Os03g53400
OsAffx.13479.1.S1_at--7--6151Chr03:30590185..30590209 (25 bp)
GAGGGTCTCGCTGATGATCTACGGT
LOC_Os03g53400
OsAffx.13479.1.S1_at--457--7171Chr03:30590189..30590213 (25 bp)
GTCTCGCTGATGATCTACGGTGGCC
LOC_Os03g53400
OsAffx.13479.1.S1_at--149--4751Chr03:30590194..30590218 (25 bp)
GCTGATGATCTACGGTGGCCTCGCC
LOC_Os03g53400
OsAffx.13479.1.S1_at--54--7431Chr03:30590225..30590249 (25 bp)
GTGTTCTGCGGCTACATCGTGTACG
LOC_Os03g53400
OsAffx.13479.1.S1_at--620--9251Chr03:30590276..30590300 (25 bp)
TCCTACGACGAGTATGTCTGGGCCG
LOC_Os03g53400
Target Sequence 
TGCTTTGCCCGCTCTACTACTACTACCAGCGCCACCCGGTGAACCTCCTCCTGCTGGCCCTCTTCACGGCGGCGATCAGC
TTCGCCGTGGGCCTCACCTGCGCGTTCACCAAGGGCGAGGTGATCCTCGAGTCGGCGATCCTGACGGCCGCGGTGGTGGT
GAGCCTGACGGCGTACACGTTCTGGGCGGCGCGGCGCGGCCACGACTTCAGCTTCCTCGGCCCGTTCCTCTTCGCCGCCG
TCATGATCCTCATGGTGTTCGCGCTCATCCAGGTCTTCTTCCCGCTCGGGAGGGTCTCGCTGATGATCTACGGTGGCCTC
GCCGCGCTCGTGTTCTGCGGCTACATCGTGTACGACACGGATAACCTCATCAAGAGGTACTCCTACGACGAGTATGTCTG
GGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis