Browse Element(s) Details


OsAffx.13481.2.S1_at

Description tigr:9631.m05245
TID=OsAffx.13481.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53410OsAffx.25701.1.S1_at11/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.12223.2.S1_at6/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53410Os.46332.1.A1_at1/113+30591998..30595545protein kinase, putative, expressed
LOC_Os03g53419OsAffx.16630.1.S1_at1/113+30595929..30596609hypothetical protein
LOC_Os03g53430OsAffx.20729.1.S1_x_at3/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53430OsAffx.1674.1.S1_at1/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53440NANA3+30610275..30611063hypothetical protein
LOC_Os03g53450OsAffx.25702.1.S1_at11/113+30612242..30613469hypothetical protein
LOC_Os03g53470OsAffx.25703.1.S1_x_at4/113+30615632..30616012hypothetical protein
LOC_Os03g53480OsAffx.13481.2.S1_at11/113+30617076..30619258hypothetical protein
LOC_Os03g53490Os.6849.1.S2_at11/113+30627195..30629614pentatricopeptide, putative, expressed
LOC_Os03g53490Os.6849.1.S1_at11/113+30627195..30629614pentatricopeptide, putative, expressed
LOC_Os03g53500Os.50757.1.S2_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53500Os.50757.1.S1_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53510Os.52844.1.S1_at11/113+30639885..30642889transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13481.2.S1_at--890--10053Chr11:18532023..18532042 (20 bp)
TAGTAGTGTTGTTTGGCCACGCCAG
NONE
OsAffx.13481.2.S1_at--585--3371Chr03:30618993..30619017 (25 bp)
CAGCCTCGACGGGACAGTTGGTTAA
LOC_Os03g53480
OsAffx.13481.2.S1_at--831--7651Chr03:30618724..30618748 (25 bp)
GGGATGGTATCTGAACTTATTTTTT
LOC_Os03g53480
OsAffx.13481.2.S1_at--404--10371Chr03:30618703..30618727 (25 bp)
TTTTTTCCGAGCTACCAAGGCGATT
LOC_Os03g53480
OsAffx.13481.2.S1_at--386--9971Chr03:30618691..30618715 (25 bp)
TACCAAGGCGATTAGGGCGCGGACA
LOC_Os03g53480
OsAffx.13481.2.S1_at--443--3431Chr03:30618660..30618684 (25 bp)
CAGATGAGACATGGCCTGGGAGCCT
LOC_Os03g53480
OsAffx.13481.2.S1_at--598--5871Chr03:30618641..30618665 (25 bp)
GAGCCTGGGAGGATCCCAAGCAAGT
LOC_Os03g53480
OsAffx.13481.2.S1_at--239--9831Chr03:30618617..30618641 (25 bp)
TAAACGGACCGCGTAGAAGAGCTTG
LOC_Os03g53480
OsAffx.13481.2.S1_at--5--7698Chr07:13478766..13478786 (21 bp)
GGGTATTCCCGTCTAAGCGTTGAGC
NONE
OsAffx.13481.2.S1_at--782--1635Chr03:5480564..5480588 (25 bp)
AGCGTTGAGCCGTTGGCCGCTTCTA
NONE
OsAffx.13481.2.S1_at--345--7514Chr03:5480688..5480712 (25 bp)
GTGGTAGCGCGGTCCAGTTCTCGCC
NONE
Target Sequence 
TAGTAGTGTTGTTTGGCCACGCCAGCCTCGACGGGACAGTTGGTTAAGTGATTCAACTAGGGACAATAAGATTCGATGTA
AAGTTGAGGGATGGTATCTGAACTTATTTTTTTTCCGAGCTACCAAGGCGATTAGGGCGCGGACAGTCGGACAGATGAGA
CATGGCCTGGGAGCCTGGGAGGATCCCAAGCAAGTAAACGGACCGCGTAGAAGAGCTTGGGGCTGGGAGGAAAAGAAGGC
CGCGCAGGGCAGGGCAAGGAAAGAGCAGTGGCGGAGCCAGGATTTTAAAGTTGGGTATTCCCGTCTAAGCGTTGAGCCGT
TGGCCGCTTCTACCCCTCGCGGCTGCCGGCCACCCAACCGGCCTGACTGCCTGAGCTTGGCGGAGTGGCGGGCGCCACCC
GCTACCCGCCGCGGCAATAGCCTCCCCCTCCGTGGTAGCGCGGTCCAGTTCTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13481.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis