Browse Element(s) Details


OsAffx.13508.1.S1_at

Description tigr:9631.m05545
TID=OsAffx.13508.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5664011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56580Os.17090.1.S1_at11/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56580Os.51926.1.S1_x_at1/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56590Os.45014.1.S1_at8/113+32177135..32179764expressed protein
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein
LOC_Os03g56670Os.12283.1.S1_at11/113+32211866..32213110Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed
LOC_Os03g56676NANA3+32222755..32226996retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13508.1.S1_at--686--10511Chr03:32198360..32198384 (25 bp)
TTCAGGACGGGCTACTTCATGTTAG
LOC_Os03g56640
OsAffx.13508.1.S1_at--423--5751Chr03:32198355..32198379 (25 bp)
GACGGGCTACTTCATGTTAGATAGA
LOC_Os03g56640
OsAffx.13508.1.S1_at--503--7117Chr09:17014610..17014632 (22 bp)
ATGTTAGATAGATCCCCTCCCCGTT
NONE
OsAffx.13508.1.S1_at--124--7675Chr02:2351342..2351361 (20 bp)
GGGATCTTGACCTGCGCCCTGATCG
NONE
OsAffx.13508.1.S1_at--998--10792Chr12:12586281..12586302 (22 bp)
TTGTCACCCTGCGCCACATAAATAG
NONE
OsAffx.13508.1.S1_at--309--2171Chr03:32198140..32198224 (25 bp)
ACACGGCACGAGTGACGGGAAGCAT
LOC_Os03g56640
OsAffx.13508.1.S1_at--149--8951Chr03:32198128..32198152 (25 bp)
TGACGGGAAGCATCACTGCGCGCCA
LOC_Os03g56640
OsAffx.13508.1.S1_at--1133--3231Chr03:32198025..32198049 (25 bp)
CAAGCACGCGACGACAACTAGGGAT
LOC_Os03g56640
OsAffx.13508.1.S1_at--657--2191Chr03:32198012..32198036 (25 bp)
ACAACTAGGGATGGCAGTGGGTCAA
LOC_Os03g56640
OsAffx.13508.1.S1_at--766--3451Chr03:32197998..32198022 (25 bp)
CAGTGGGTCAAGAAAATCGGACGGT
LOC_Os03g56640
OsAffx.13508.1.S1_at--982--471Chr03:32197983..32198007 (25 bp)
ATCGGACGGTACTGATGTCCCCGAA
LOC_Os03g56640
Target Sequence 
TTCAGGACGGGCTACTTCATGTTAGATAGATCCCCTCCCCGTTGGGCCCAACGGCACAACGGGGATCTTGACCTGCGCCC
TGATCGGGGGCGCCCAGCCCAATGGCTGGTGGGCCTTGTCACCCTGCGCCACATAAATAGAGGGTGGAGGCCGGGGCGGC
ACACGGCACGAGTGACGGGAAGCATCACTGCGCGCCACGCCTCATCGTCACCACCTACGACCGCCGCTGCCGCGACCACC
ATCGCCATCAAGTCCACCGTCGCCACCGTCCACGTCAAGCACGCGACGACAACTAGGGATGGCAGTGGGTCAAGAAAATC
GGACGGTACTGATGTCCCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis