Browse Element(s) Details


OsAffx.13510.1.S1_at

Description gb:NM_184982.1
DB_XREF= gi:34897049
TID=OsAffx.13510.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0010I09.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5671411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56700OsAffx.25737.1.S1_at11/113+32246007..32247298expressed protein
LOC_Os03g56700OsAffx.25737.1.S1_x_at11/113+32246007..32247298expressed protein
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56714OsAffx.13510.1.S1_at11/113+32257582..32258325expressed protein
LOC_Os03g56720OsAffx.22657.1.S1_at7/113+32259268..32260244hypothetical protein
LOC_Os03g56724NANA3+32261045..32262136hypothetical protein
LOC_Os03g56730Os.26576.2.S1_x_at11/113+32264338..32265988expressed protein
LOC_Os03g56730Os.26576.1.S1_at10/113+32264338..32265988expressed protein
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13510.1.S1_at--1005--7711Chr03:32258139..32258163 (25 bp)
GGGTGGATCCTACTACGCCAGAGCA
LOC_Os03g56714
OsAffx.13510.1.S1_at--1119--3211Chr03:32258077..32258101 (25 bp)
CAAGATCCATCTCCCAGAAGGTCTG
LOC_Os03g56714
OsAffx.13510.1.S1_at--1006--5311Chr03:32258061..32258085 (25 bp)
GAAGGTCTGTCAACCAGATGCTCCT
LOC_Os03g56714
OsAffx.13510.1.S1_at--255--2011Chr03:32257927..32257951 (25 bp)
ACACGACGACGACATTGGAACCCAG
LOC_Os03g56714
OsAffx.13510.1.S1_at--600--1691Chr03:32257904..32257928 (25 bp)
AGCCATTGGATCCACCCATGGATGG
LOC_Os03g56714
OsAffx.13510.1.S1_at--855--9531Chr03:32257826..32257850 (25 bp)
TCTACTTCAACTGCTTCTTCGAGAG
LOC_Os03g56714
OsAffx.13510.1.S1_at--324--3571Chr03:32257802..32257826 (25 bp)
GCATCGGAGTACTGGAGTTTACCCC
LOC_Os03g56714
OsAffx.13510.1.S1_at--180--6731Chr03:32257768..32257792 (25 bp)
GTTCAGCACCATTGAGATCGTCGAT
LOC_Os03g56714
OsAffx.13510.1.S1_at--695--3931Chr03:32257712..32257736 (25 bp)
CGGCGGTCGTGTTCTTGGTAGAATC
LOC_Os03g56714
OsAffx.13510.1.S1_at--943--3511Chr03:32257672..32257696 (25 bp)
CATGATCTGTCTGCGGCTTGACCAC
LOC_Os03g56714
OsAffx.13510.1.S1_at--307--8931Chr03:32257654..32257678 (25 bp)
TGACCACGACTTCGCCATATACGAT
LOC_Os03g56714
Target Sequence 
GGGTGGATCCTACTACGCCAGAGCACCGCCACCTTCCTGCAGAACCCTCAGGATCCCCAAGACAAGATCCATCTCCCAGA
AGGTCTGTCAACCAGATGCTCCTGCCAGCTCTCCGGCAAGCCATCTCTCCCTGGCTGCATCGTCCTCCTCGTTGAGCCCG
TCGCCACCAACATATGGTACTGTCGCATCGGCGACGATGAAGAGTGGACGAGACACGACGACGACATTGGAACCCAGCCA
TTGGATCCACCCATGGATGGCAAGGACCACGAGAAGGTGCCGATATGCGAGATCGCCGCTTGCCGGGGCAAGTTCTACTT
CAACTGCTTCTTCGAGAGCATCGGAGTACTGGAGTTTACCCCCACGCCGGTGTTCAGCACCATTGAGATCGTCGATCCTA
TCCCCGGAGGATTAGGGGTGATAGGCGCGGCGGTCGTGTTCTTGGTAGAATCCGAGGACGAATTGTACATGATCTGTCTG
CGGCTTGACCACGACTTCGCCATATACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis