Browse Element(s) Details


OsAffx.13523.1.S1_at

Description tigr:9631.m05635
TID=OsAffx.13523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5740011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57340Os.12385.1.S1_at11/113+32647348..32650266DnaJ protein homolog, putative, expressed
LOC_Os03g57349Os.10425.1.S1_at11/113+32654295..32654950expressed protein
LOC_Os03g57349Os.14591.1.S1_at1/113+32654295..32654950expressed protein
LOC_Os03g57360OsAffx.25777.1.S1_at9/113+32656985..32657797hypothetical protein
LOC_Os03g57370NANA3+32658690..32664811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g57380OsAffx.20354.1.S1_at2/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57380Os.46995.1.S1_x_at1/113+32665117..32668068retrotransposon protein, putative, unclassified
LOC_Os03g57390OsAffx.3632.1.S1_at11/113+32670353..32670634hypothetical protein
LOC_Os03g57400OsAffx.13523.1.S1_at11/113+32671097..32671937hypothetical protein
LOC_Os03g57410Os.56034.1.S1_at11/113+32675141..32676317Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g57420Os.9341.1.S1_at11/113+32678700..32681277ML domain protein, putative, expressed
LOC_Os03g57430Os.17023.1.S1_a_at11/113+32683646..32689998expressed protein
LOC_Os03g57450Os.53349.1.S1_at11/113+32690677..32694579Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g57460Os.22627.1.S1_at10/113+32695971..32699491beta-Ig-H3 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13523.1.S1_at--339--7751Chr03:32671707..32671731 (25 bp)
GGTGTCACGCATCCCGTCTTATAAC
LOC_Os03g57400
OsAffx.13523.1.S1_at--390--5791Chr03:32671679..32671703 (25 bp)
GACGACTACAGCGACTACGAGCCAA
LOC_Os03g57400
OsAffx.13523.1.S1_at--1034--3551Chr03:32671473..32671654 (25 bp)
CATCATATGGTCCTGAGCCAGCTGA
LOC_Os03g57400
OsAffx.13523.1.S1_at--1064--5851Chr03:32671459..32671483 (25 bp)
GAGCCAGCTGACGATGAGACGGACA
LOC_Os03g57400
OsAffx.13523.1.S1_at--407--6411Chr03:32671420..32671444 (25 bp)
GATCTAGTTGACAGTGTGACGGACA
LOC_Os03g57400
OsAffx.13523.1.S1_at--398--1691Chr03:32671376..32671400 (25 bp)
AGCCATTTGGGCCTTCTATGAGCGC
LOC_Os03g57400
OsAffx.13523.1.S1_at--647--1971Chr03:32671282..32671306 (25 bp)
ACTGCAGAGCTTGTTCATAGATCCA
LOC_Os03g57400
OsAffx.13523.1.S1_at--889--2391Chr03:32671234..32671258 (25 bp)
AAACTATGTTTTGGCCCATACTGCG
LOC_Os03g57400
OsAffx.13523.1.S1_at--84--5232Chr03:32671183..32671207 (25 bp)
GAATTTCTGCTTAAGTTTGGCCATT
LOC_Os03g57400
OsAffx.13523.1.S1_at--319--6851Chr03:32671169..32671193 (25 bp)
GTTTGGCCATTTTCACGGGATTCAC
LOC_Os03g57400
OsAffx.13523.1.S1_at--794--5351Chr03:32671127..32671151 (25 bp)
GAAGATCGACTTCCCAAAGCCGCGG
LOC_Os03g57400
Target Sequence 
GGTGTCACGCATCCCGTCTTATAACCTCGACGACTACAGCGACTACGAGCCAACTCCTGCTCCTCCCAGCCCATTGCCAT
CATATGGTCCTGAGCCAGCTGACGATGAGACGGACAAGGATTTTGAGACTGATCTAGTTGACAGTGTGACGGACAAGGAT
TTTGAATCTGATGAAGCCATTTGGGCCTTCTATGAGCGCTGGTGCAAGGCTTACGATAAGGAGCGTGACCATGCTGAGAT
GGCTCACCGGTTCAAGATATTCAAGGAAACTGCAGAGCTTGTTCATAGATCCAACAAGGATGCTCCAGAAGAAGAGAAAC
TATGTTTTGGCCCATACTGCGATGGGTTCGATGAGCAACAGAGGGCTGAATTTCTGCTTAAGTTTGGCCATTTTCACGGG
ATTCACGAATTTGTAGAGCAGTGGAAGATCGACTTCCCAAAGCCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis