Browse Element(s) Details


OsAffx.13551.1.S1_at

Description tigr:9631.m05848
TID=OsAffx.13551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5940010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified
LOC_Os03g59430Os.52136.1.S1_at11/113+33768444..33773080Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os03g59440Os.4965.1.S1_at11/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59440Os.30611.1.S1_at1/113+33773568..33774433Dirigent-like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13551.1.S1_at--806--5972Chr11:16543101..16543407 (25 bp)
GAGACGGAAACGGAGAACATCTTGA
NONE
OsAffx.13551.1.S1_at--315--2512Chr11:16543398..16543422 (25 bp)
AACATCTTGAGCAACCCGGCAATAA
NONE
OsAffx.13551.1.S1_at--335--1492Chr11:16543407..16543431 (25 bp)
AGCAACCCGGCAATAAGCGCCGCGT
NONE
OsAffx.13551.1.S1_at--784--352Chr11:16543419..16543443 (25 bp)
ATAAGCGCCGCGTTGGAGGATCTCG
NONE
OsAffx.13551.1.S1_at--979--6152Chr11:16543434..16543458 (25 bp)
GAGGATCTCGCCGACACAAATTTCT
NONE
OsAffx.13551.1.S1_at--374--4511Chr03:33751154..33751178 (25 bp)
GCCGACACAAATTTCTCACTGTACT
LOC_Os03g59400
OsAffx.13551.1.S1_at--259--3131Chr03:33751163..33751187 (25 bp)
AATTTCTCACTGTACTCTTACCTTT
LOC_Os03g59400
OsAffx.13551.1.S1_at--500--9671Chr03:33751169..33751193 (25 bp)
TCACTGTACTCTTACCTTTTTTGCC
LOC_Os03g59400
OsAffx.13551.1.S1_at--281--3671Chr03:33751184..33751208 (25 bp)
CTTTTTTGCCTCTGTAACAGCAGGG
LOC_Os03g59400
OsAffx.13551.1.S1_at--544--7031Chr03:33751197..33751221 (25 bp)
GTAACAGCAGGGAGAATGGGCAAAA
LOC_Os03g59400
OsAffx.13551.1.S1_at--893--591Chr03:33751248..33751272 (25 bp)
ATGCGGTAGGAGCATCGGCGGTCGT
LOC_Os03g59400
Target Sequence 
GAGACGGAAACGGAGAACATCTTGAGCAACCCGGCAATAAGCGCCGCGTTGGAGGATCTCGCCGACACAAATTTCTCACT
GTACTCTTACCTTTTTTGCCTCTGTAACAGCAGGGAGAATGGGCAAAAGTGGGAGCGGCGGCGATGGCATCGGCATGCGG
TAGGAGCATCGGCGGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis