Browse Element(s) Details


OsAffx.13593.1.S1_at

Description tigr:9631.m06295
TID=OsAffx.13593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6360011/11Tetraspanin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein
LOC_Os03g63620Os.56016.1.S1_at11/113+35861701..35862781Tetraspanin family protein, expressed
LOC_Os03g63630NANA3+35867160..35873312transposon protein, putative, unclassified
LOC_Os03g63640NANA3+35873946..35877182transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13593.1.S1_at--308--5271Chr03:35855657..35855681 (25 bp)
GAATGCCCGAGAGTACAGCCTCAGT
LOC_Os03g63600
OsAffx.13593.1.S1_at--1009--10291Chr03:35855729..35855753 (25 bp)
TTTCTGGGCATCAACCAGCGCGTGC
LOC_Os03g63600
OsAffx.13593.1.S1_at--362--2572Chr03:35855775..35855799 (25 bp)
AACGGCATGACTAACCTGGTACGCA
LOC_Os03g63600
OsAffx.13593.1.S1_at--1127--511Chr03:35855831..35855855 (25 bp)
ATCCTCCTTCGAAAGGTGGGCCAAG
LOC_Os03g63600
OsAffx.13593.1.S1_at--113--7731Chr03:35855863..35855887 (25 bp)
GGGTGGACGCCGACCCACGTGTAAT
LOC_Os03g63600
OsAffx.13593.1.S1_at--1053--3331Chr03:35855878..35855900 (23 bp)
CACGTGTAATGTCCCCTATCGAGTC
LOC_Os03g63600
OsAffx.13593.1.S1_at--1111--9171Chr03:35856629..35856653 (25 bp)
TGCCGTTGCCCAAGTAACCAACAAC
LOC_Os03g63600
OsAffx.13593.1.S1_at--88--2231Chr03:35856655..35856679 (25 bp)
ACAAGGACGACGACTGTAGCCGGTG
LOC_Os03g63600
OsAffx.13593.1.S1_at--1152--8051Chr03:35856679..35856703 (25 bp)
GGAGCAACGACCATCAAACGCTTTG
LOC_Os03g63600
OsAffx.13593.1.S1_at--738--8551Chr03:35856756..35856780 (25 bp)
TGGAGTGTCGCTGCCATCTATATCG
LOC_Os03g63600
OsAffx.13593.1.S1_at--211--451Chr03:35856771..35856795 (25 bp)
ATCTATATCGTTCTCGCCTTCATCG
LOC_Os03g63600
Target Sequence 
GAATGCCCGAGAGTACAGCCTCAGTGAGTGCAAGCGGGGGTGGCTTAGGGGTCGCGTCACCCACTCCTCGCATTTCTGGG
CATCAACCAGCGCGTGCCTCCGCCGCAGCCACGTCTGCAACGGCATGACTAACCTGGTACGCAACCCCGACACCGGCATT
TTTGTTCCCCGCCCATCCTCCTTCGAAAGGTGGGCCAAGAGACACGGGGTGGACGCCGACCCACGTGTAATGTCCCCTAT
CGAGTCTGGATGCTGCAAGCCACCATCATCGTGTGGATTAACATACGTGAATGGGACGACGTGGATATCGACAGCAGCAT
CAGCAGGTGCCCCAGCTGCCGTTGCCCAAGTAACCAACAACAACAAGGACGACGACTGTAGCCGGTGGAGCAACGACCAT
CAAACGCTTTGCTTCCAGTGCGACTCGTGCAAGGCTGGCTTCCTCCGCCACACCAGTCAGGCCTGGAGTGTCGCTGCCAT
CTATATCGTTCTCGCCTTCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis