Browse Element(s) Details


OsAffx.13645.1.S1_at

Description tigr:9632.m00251
TID=OsAffx.13645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0344011/11hypothetical protein
LOC_Os11g171601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03390OsAffx.13643.1.S1_at11/114+1441154..1441815hypothetical protein
LOC_Os04g03400NANA4+1442378..1444203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03410OsAffx.1674.1.S1_at1/114+1447978..1452114retrotransposon protein, putative, unclassified
LOC_Os04g03420OsAffx.8268.1.S1_at1/114+1454363..1456364retrotransposon protein, putative, unclassified
LOC_Os04g03430OsAffx.13644.1.S1_at11/114+1458180..1459312hypothetical protein
LOC_Os04g03430OsAffx.26961.1.S1_x_at1/114+1458180..1459312hypothetical protein
LOC_Os04g03440OsAffx.13645.1.S1_at11/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.26663.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.13772.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.14945.1.S1_x_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03450OsAffx.20387.1.S1_x_at2/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03450OsAffx.4941.1.S1_at2/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03450OsAffx.10632.1.S1_at1/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03460NANA4+1481577..1483432retrotransposon, putative, centromere-specific
LOC_Os04g03470NANA4+1486024..1491276retrotransposon protein, putative, unclassified
LOC_Os04g03480NANA4+1492559..1493512hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13645.1.S1_at--284--4691Chr04:1467948..1467972 (25 bp)
GCGGACACCCTGACATGCCGGTGAT
LOC_Os04g03440
OsAffx.13645.1.S1_at--376--5111Chr04:1467980..1468004 (25 bp)
GCACTTGCGCTCGAGTCGTATATAC
LOC_Os04g03440
OsAffx.13645.1.S1_at--71--4791Chr04:1467988..1468012 (25 bp)
GCTCGAGTCGTATATACCGCGGGAG
LOC_Os04g03440
OsAffx.13645.1.S1_at--891--7651Chr04:1468014..1468038 (25 bp)
GGGTCAGCCAAAGCCCGTCCAAGGA
LOC_Os04g03440
OsAffx.13645.1.S1_at--1120--6291Chr04:1468051..1468179 (25 bp)
GATGACGTCCCTAGACCTCGTGGAT
LOC_Os04g03440
OsAffx.13645.1.S1_at--586--1371Chr04:1468167..1468191 (25 bp)
AGACCTCGTGGATGTGTTGGCTAAC
LOC_Os04g03440
OsAffx.13645.1.S1_at--490--3991Chr04:1468173..1468197 (25 bp)
CGTGGATGTGTTGGCTAACCGAGAT
LOC_Os04g03440
OsAffx.13645.1.S1_at--861--2771Chr04:1468324..1468348 (25 bp)
AAGAGCTGCTGTACAGCAATAGCGG
LOC_Os04g03440
OsAffx.13645.1.S1_at--408--8751Chr04:1468333..1468357 (25 bp)
TGTACAGCAATAGCGGGAGTCTGCA
LOC_Os04g03440
OsAffx.13645.1.S1_at--968--2711Chr04:1468474..1468498 (25 bp)
AAGCAGGAGTATTGTCGCGCGAGCC
LOC_Os04g03440
OsAffx.13645.1.S1_at--639--32Chr04:1468484..1468508 (25 bp)
ATTGTCGCGCGAGCCGCTATGCCGG
LOC_Os04g03440
Target Sequence 
GCGGACACCCTGACATGCCGGTGATCGTCCCGGCACTTGCGCTCGAGTCGTATATACCGCGGGAGGGGGTCAGCCAAAGC
CCGTCCAAGGAGGCGAACATGGCGATGACGTCCCTAGACCTCGTGGATGTGTTGGCTAACCGAGATCGTCGAATCCAATA
TTGGAAGATGAAGCTCGAGGTGGCCGAACTCGAGAGGGACATGGTGAAGGTGTGGTTCAACTCGTACCTCAAGAGCTGCT
GTACAGCAATAGCGGGAGTCTGCAAGGAGCTCCGAGTCCCTCGCGGAAATCCCGAGGAGTCAGCGGCCGGATACATCTTG
TGGTTGAATCGGGCCTGCGCGCAGCTCGAAGGGATCGGCAAGCGCATCGACGAGGCCCTGAAGCAGGAGTATTGTCGCGC
GAGCCGCTATGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis