Browse Element(s) Details


OsAffx.26663.1.S1_at

Description tigr:9632.m05776
TID=OsAffx.26663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g034401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03390OsAffx.13643.1.S1_at11/114+1441154..1441815hypothetical protein
LOC_Os04g03400NANA4+1442378..1444203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03410OsAffx.1674.1.S1_at1/114+1447978..1452114retrotransposon protein, putative, unclassified
LOC_Os04g03420OsAffx.8268.1.S1_at1/114+1454363..1456364retrotransposon protein, putative, unclassified
LOC_Os04g03430OsAffx.13644.1.S1_at11/114+1458180..1459312hypothetical protein
LOC_Os04g03430OsAffx.26961.1.S1_x_at1/114+1458180..1459312hypothetical protein
LOC_Os04g03440OsAffx.13645.1.S1_at11/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.26663.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.13772.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.14945.1.S1_x_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03450OsAffx.20387.1.S1_x_at2/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03450OsAffx.4941.1.S1_at2/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03450OsAffx.10632.1.S1_at1/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03460NANA4+1481577..1483432retrotransposon, putative, centromere-specific
LOC_Os04g03470NANA4+1486024..1491276retrotransposon protein, putative, unclassified
LOC_Os04g03480NANA4+1492559..1493512hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26663.1.S1_at--877--5531Chr04:34918238..34918262 (25 bp)
GAAACGATGCTACCAGCCTTCCTTC
NONE
OsAffx.26663.1.S1_at--27--4831Chr04:34918278..34918302 (25 bp)
GCTCTAGTCTTCCTCTTTTGTTGCC
NONE
OsAffx.26663.1.S1_at--1131--10251Chr04:34918294..34918318 (25 bp)
TTTGTTGCCCTCGTTTGCTGCAGAG
NONE
OsAffx.26663.1.S1_at--320--10711Chr04:34918298..34918322 (25 bp)
TTGCCCTCGTTTGCTGCAGAGGATT
NONE
OsAffx.26663.1.S1_at--285--7911Chr04:34918318..34918342 (25 bp)
GGATTGGTGGCCACCACGGGTCATA
NONE
OsAffx.26663.1.S1_at--810--4351Chr04:34918331..34918355 (25 bp)
CCACGGGTCATACAACACGGTTCAA
NONE
OsAffx.26663.1.S1_at--292--7691Chr04:34918335..34918359 (25 bp)
GGGTCATACAACACGGTTCAACGGT
NONE
OsAffx.26663.1.S1_at--309--7891Chr04:34918349..34918451 (25 bp)
GGTTCAACGGTGGAAATCAGATCGA
NONE
OsAffx.26663.1.S1_at--531--9653Chr04:34928495..34928519 (25 bp)
TCAGATCGAGGTGGAATCCAAGATG
NONE
OsAffx.26663.1.S1_at--596--5251Chr04:34918492..34918516 (25 bp)
GAATCGACTGTAGTCCAAATCGGCT
NONE
OsAffx.26663.1.S1_at--675--72734Chr12:14018946..14019149 (25 bp)
GTCCAAATCGGCTAAGAGATATGTT
NONE
Target Sequence 
GAAACGATGCTACCAGCCTTCCTTCACGCTGTCCTCCTCCGCTCTAGTCTTCCTCTTTTGTTGCCCTCGTTTGCTGCAGA
GGATTGGTGGCCACCACGGGTCATACAACACGGTTCAACGGTGGAAATCAGATCGAGGTGGAATCCAAGATGAAGATCGT
TGCGGAAACAGAGTAAGAATCGACTGTAGTCCAAATCGGCTAAGAGATATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis