Browse Element(s) Details


OsAffx.13669.1.S1_at

Description tigr:9632.m00385
TID=OsAffx.13669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0475011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04700NANA4+2245801..2247497retrotransposon protein, putative, unclassified
LOC_Os04g04710NANA4+2247699..2250509retrotransposon protein, putative, unclassified
LOC_Os04g04720NANA4+2254019..2259642retrotransposon protein, putative, unclassified
LOC_Os04g04730NANA4+2260562..2263176retrotransposon protein, putative, unclassified
LOC_Os04g04740OsAffx.3722.1.S1_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04740OsAffx.3722.1.S1_x_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04750OsAffx.13669.1.S1_at11/114+2269017..2272134Peroxidase family protein, expressed
LOC_Os04g04760OsAffx.13670.1.S1_at11/114+2275067..2276084hypothetical protein
LOC_Os04g04770OsAffx.13668.1.S1_x_at1/114+2279193..2280068Legume lectins beta domain containing protein
LOC_Os04g04780OsAffx.13671.1.S1_x_at11/114+2281349..2281638expressed protein
LOC_Os04g04790OsAffx.13672.1.S1_at10/114+2282838..2286662hypothetical protein
LOC_Os04g04800OsAffx.25862.2.S1_at9/114+2287918..2289845Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13669.1.S1_at--341--2091Chr04:2269528..2269552 (25 bp)
ACATCGACCAGCTCACGGGCAACTT
LOC_Os04g04750
OsAffx.13669.1.S1_at--410--9331Chr04:2269504..2269528 (25 bp)
TCGCCCGGAAGAACTTCACCGCGGA
LOC_Os04g04750
OsAffx.13669.1.S1_at--459--6391Chr04:2269389..2269413 (25 bp)
GATCAACCCGAGGTACCAGGCGGCG
LOC_Os04g04750
OsAffx.13669.1.S1_at--343--1831Chr04:2269327..2269351 (25 bp)
ACGCGACGGACCCAATCGAGAAGTT
LOC_Os04g04750
OsAffx.13669.1.S1_at--758--9371Chr04:2269312..2269336 (25 bp)
TCGAGAAGTTCAACATCCGCGACAT
LOC_Os04g04750
OsAffx.13669.1.S1_at--406--8651Chr04:2269228..2269252 (25 bp)
TGGGCGTGCTCGACAACAGCTTCTA
LOC_Os04g04750
OsAffx.13669.1.S1_at--971--4391Chr04:2269199..2269223 (25 bp)
GCCAACCTGCAGAACATGGTGCTGC
LOC_Os04g04750
OsAffx.13669.1.S1_at--21--2491Chr04:2269187..2269211 (25 bp)
AACATGGTGCTGCTCAGGTCCGACT
LOC_Os04g04750
OsAffx.13669.1.S1_at--875--3831Chr04:2269178..2269202 (25 bp)
CTGCTCAGGTCCGACTGGGAGCTGA
LOC_Os04g04750
OsAffx.13669.1.S1_at--207--8891Chr04:2269156..2269180 (25 bp)
TGAGGAATGGCACCGATCCGTCGCT
LOC_Os04g04750
OsAffx.13669.1.S1_at--918--3371Chr04:2269125..2269149 (25 bp)
CAGCCTGTTCGCGTTCAGGGAGAAC
LOC_Os04g04750
Target Sequence 
ACATCGACCAGCTCACGGGCAACTTCGCCCGGAAGAACTTCACCGCGGAGGAGCTCGTCGCCCTCGCCGGCGCGCACGCC
GTCGGCGTCAGCCACCTCTCCTCCTTCCGCGACCGCATCAACGCCACCACCGAGACCCCGATCAACCCGAGGTACCAGGC
GGCGCTCGCCGGCGACGTCGAGACCCTGAAGGGGCGGCAGAACGCGACGGACCCAATCGAGAAGTTCAACATCCGCGACA
TGGACGCCGGGTTCCGGAACGCGTCGGGGTTCGACGCCGCCGGCGTGGACATGGCGGCTGTGGGCGTGCTCGACAACAGC
TTCTACCACGCCAACCTGCAGAACATGGTGCTGCTCAGGTCCGACTGGGAGCTGAGGAATGGCACCGATCCGTCGCTCGG
CGACAGCCTGTTCGCGTTCAGGGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis