Browse Element(s) Details


OsAffx.13705.1.S1_at

Description tigr:9632.m00631
TID=OsAffx.13705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0719011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07150OsAffx.25907.2.S1_at11/114+3779144..3781403hypothetical protein
LOC_Os04g07150OsAffx.25907.2.S1_x_at11/114+3779144..3781403hypothetical protein
LOC_Os04g07150OsAffx.25907.1.S1_x_at2/114+3779144..3781403hypothetical protein
LOC_Os04g07160NANA4+3786839..3790171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.47463.1.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.14491.2.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13703.1.S1_x_at3/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.25916.1.S1_at2/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13720.1.S1_at1/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07190OsAffx.13705.1.S1_at11/114+3805040..3806141hypothetical protein
LOC_Os04g07190OsAffx.25918.1.S1_at2/114+3805040..3806141hypothetical protein
LOC_Os04g07200OsAffx.25904.1.S1_at11/114+3811029..3813437D-mannose binding lectin family protein
LOC_Os04g07210OsAffx.13706.1.S1_at11/114+3814553..3815179hypothetical protein
LOC_Os04g07220OsAffx.25905.1.S1_at10/114+3815595..3816837hypothetical protein
LOC_Os04g07230NANA4+3823207..3824428retrotransposon protein, putative, unclassified
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13705.1.S1_at--801--10011Chr04:3805843..3805867 (25 bp)
TAGACTGCCCTTCGAGGAGGTCCTA
LOC_Os04g07190
OsAffx.13705.1.S1_at--1071--451Chr04:3805816..3805840 (25 bp)
ATCTCCGTGCGTGGGATGACCGTCG
LOC_Os04g07190
OsAffx.13705.1.S1_at--483--1551Chr04:3805756..3805780 (25 bp)
AGCTTTGCATTGAGGGCATCCCCAT
LOC_Os04g07190
OsAffx.13705.1.S1_at--178--3871Chr04:3805700..3805724 (25 bp)
CTGATTGGCCCAAAGTGTGCTGTGC
LOC_Os04g07190
OsAffx.13705.1.S1_at--630--8691Chr04:3805685..3805709 (25 bp)
TGTGCTGTGCACTACATCGAGGAGT
LOC_Os04g07190
OsAffx.13705.1.S1_at--453--3631Chr04:3805470..3805494 (25 bp)
CTTGCGGCAGTGTAGGTGGCACCAC
LOC_Os04g07190
OsAffx.13705.1.S1_at--684--7531Chr04:3805455..3805479 (25 bp)
GTGGCACCACGAATGCACCATCAGA
LOC_Os04g07190
OsAffx.13705.1.S1_at--353--2131Chr04:3805404..3805428 (25 bp)
ACAGGAGGGCTACTTGATTCTTATC
LOC_Os04g07190
OsAffx.13705.1.S1_at--840--6551Chr04:3805389..3805413 (25 bp)
GATTCTTATCGTGTGGCAGCCAAGG
LOC_Os04g07190
OsAffx.13705.1.S1_at--620--991Chr04:3805367..3805391 (25 bp)
AGGATCGGCACCATAGCGGTGTCAT
LOC_Os04g07190
OsAffx.13705.1.S1_at--305--2751Chr04:3805075..3805099 (25 bp)
AAGAAGCTCAGGCAGCCAGCTCTAG
LOC_Os04g07190
Target Sequence 
TAGACTGCCCTTCGAGGAGGTCCTACCATCTCCGTGCGTGGGATGACCGTCGCGAGGGCCACCACATCTTCTATCGCTAC
CGGGCGAAGCTTTGCATTGAGGGCATCCCCATGCATGCCCGGACTGATGCGGCAGCAGAGAACCTGATTGGCCCAAAGTG
TGCTGTGCACTACATCGAGGAGTACTCAAGGGGGGGCAACTACAACCGCACGCATGATCTCAGGCGGCTCCGCTTGCGGC
AGTGTAGGTGGCACCACGAATGCACCATCAGAGGAAAGCAACTGGGGAGGAAGAGGAGACAGGAGGGCTACTTGATTCTT
ATCGTGTGGCAGCCAAGGATCGGCACCATAGCGGTGTCATGGACAATGACGGGCAGCAAGGCTCGGCCAAAATCCGACTC
TTGCGCTGCCCCGCGAGAGGTAGAATGGGGCACTGGGAATGAGGGTGACCAAAGGGGTAGCAAGTGGAGGAGCGTGGGAC
AAGAAACTGAAGAAAAGAAGCTCAGGCAGCCAGCTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis