Browse Element(s) Details


OsAffx.25905.1.S1_at

Description tigr:9632.m00634
TID=OsAffx.25905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0722010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07170Os.47463.1.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.14491.2.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13703.1.S1_x_at3/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.25916.1.S1_at2/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13720.1.S1_at1/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07190OsAffx.13705.1.S1_at11/114+3805040..3806141hypothetical protein
LOC_Os04g07190OsAffx.25918.1.S1_at2/114+3805040..3806141hypothetical protein
LOC_Os04g07200OsAffx.25904.1.S1_at11/114+3811029..3813437D-mannose binding lectin family protein
LOC_Os04g07210OsAffx.13706.1.S1_at11/114+3814553..3815179hypothetical protein
LOC_Os04g07220OsAffx.25905.1.S1_at10/114+3815595..3816837hypothetical protein
LOC_Os04g07230NANA4+3823207..3824428retrotransposon protein, putative, unclassified
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein
LOC_Os04g07250OsAffx.25903.4.S1_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07250OsAffx.25903.5.S1_s_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07260OsAffx.13703.1.S1_x_at11/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_x_at10/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_at8/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.26930.1.S2_x_at1/114+3840464..3845035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25905.1.S1_at--938--7311Chr04:3816762..3816786 (25 bp)
GTGCTCGCTGCATGTGCACCGTGGA
LOC_Os04g07220
OsAffx.25905.1.S1_at--532--2751Chr04:3816669..3816693 (25 bp)
AAGAACGTGGCAGTCTTGTGCGCCC
LOC_Os04g07220
OsAffx.25905.1.S1_at--365--10811Chr04:3816654..3816678 (25 bp)
TTGTGCGCCCTAACCGGGCTGCGAG
LOC_Os04g07220
OsAffx.25905.1.S1_at--916--4771NONE
GCTGCGAGGTGGAGTGTTATCTCAA
NONE
OsAffx.25905.1.S1_at--183--6791Chr04:3815901..3815925 (25 bp)
GTTATCTCAATTCACCAAAAATCGG
LOC_Os04g07220
OsAffx.25905.1.S1_at--107--3271Chr04:3815886..3815910 (25 bp)
CAAAAATCGGGTCAATCAAAGCCGT
LOC_Os04g07220
OsAffx.25905.1.S1_at--714--9771Chr04:3815842..3815866 (25 bp)
TAAGGAAGGTCGAGGCTCTTCAGAG
LOC_Os04g07220
OsAffx.25905.1.S1_at--712--4811Chr04:3815828..3815852 (25 bp)
GCTCTTCAGAGGACAAGCAACGTGA
LOC_Os04g07220
OsAffx.25905.1.S1_at--37--10351Chr04:3815653..3815677 (25 bp)
TTAGTTTGGTGGCAAGGTCTCCGCC
LOC_Os04g07220
OsAffx.25905.1.S1_at--1091--2891Chr04:3815640..3815664 (25 bp)
AAGGTCTCCGCCTCTGGCGATGCCA
LOC_Os04g07220
OsAffx.25905.1.S1_at--98--9471Chr04:3815628..3815652 (25 bp)
TCTGGCGATGCCATCGTGTGCGTCG
LOC_Os04g07220
Target Sequence 
GTGCTCGCTGCATGTGCACCGTGGAGCGGAGCCTCGCGGCGCCTGTTGTTGGTGCGCAAGGACGGGGACGAGGCGACCAC
GGCGGTGGAGGAGAAGAACGTGGCAGTCTTGTGCGCCCTAACCGGGCTGCGAGGTGGAGTGTTATCTCAATTCACCAAAA
ATCGGGTCAATCAAAGCCGTGAGCATAGCGAGTGGAGCTTAAGGAAGGTCGAGGCTCTTCAGAGGACAAGCAACGTGAGC
GCGGGGGTGCCCTCTAAACACAACCACATGGAGGAGCAGGAGCGTGTTGCCCCTTACGGTGGCGACGGCTTCCAGGTCCA
CGAGGAGTGCCTTCACAAGCCAACTCTCGGCATCACCGGTGGCCGTGAGGTTGGGAAGAAGGTGGTGATTAGTTTGGTGG
CAAGGTCTCCGCCTCTGGCGATGCCATCGTGTGCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis