Browse Element(s) Details


Os.15125.1.S1_x_at

Description gb:AK111451.1
DB_XREF= gi:32996660
TID=Os.15125.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B11, full insert sequence.
FL= gb:AK111451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0726010/11hypothetical protein
LOC_Os04g071107/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07220OsAffx.25905.1.S1_at10/114+3815595..3816837hypothetical protein
LOC_Os04g07230NANA4+3823207..3824428retrotransposon protein, putative, unclassified
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein
LOC_Os04g07250OsAffx.25903.4.S1_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07250OsAffx.25903.5.S1_s_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07260OsAffx.13703.1.S1_x_at11/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_x_at10/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_at8/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.26930.1.S2_x_at1/114+3840464..3845035hypothetical protein
LOC_Os04g07269OsAffx.1198.1.S1_at1/114+3848303..3849160NA
LOC_Os04g07280Os.47568.1.A1_s_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_x_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.30400.1.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_at1/114+3853075..3856415expressed protein
LOC_Os04g07290OsAffx.21897.5.S1_x_at4/114+3858503..3861427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07300NANA4+3861743..3867852retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15125.1.S1_x_at--96--8492Chr04:3841200..3841224 (25 bp)
TGGCGGCGATGCTACGTGACAACGC
LOC_Os04g07260
Os.15125.1.S1_x_at--304--4052Chr04:3841206..3841230 (25 bp)
CGATGCTACGTGACAACGCCTACAA
LOC_Os04g07260
Os.15125.1.S1_x_at--270--10752Chr04:3841346..3841370 (25 bp)
TTGTTGCCGGTGATCTTCGAGGTGT
LOC_Os04g07260
Os.15125.1.S1_x_at--490--8552Chr04:3841374..3841398 (25 bp)
TGGAGATGCTGCTGTACGCCGGCAA
LOC_Os04g07260
Os.15125.1.S1_x_at--190--6112Chr04:3841412..3841436 (25 bp)
GAGTCGCATGCGAAGCAGCTCAACA
LOC_Os04g07260
Os.15125.1.S1_x_at--94--8832Chr04:3841467..3841491 (25 bp)
TGTTGGCTGAACACGCTGGGCTGTA
LOC_Os04g07260
Os.15125.1.S1_x_at--78--4152Chr04:3841480..3841504 (25 bp)
CGCTGGGCTGTATCGTATAAACAAA
LOC_Os04g07260
Os.15125.1.S1_x_at--728--10371Chr04:3841584..3841608 (25 bp)
TTTTTTGGGCCTACAAGTCTGCAAC
LOC_Os04g07260
Os.15125.1.S1_x_at--1030--8411Chr04:3841591..3841615 (25 bp)
GGCCTACAAGTCTGCAACACCGGAA
LOC_Os04g07260
Os.15125.1.S1_x_at--69--5152Chr04:3841604..3841628 (25 bp)
GCAACACCGGAACATCCCAATGGAT
LOC_Os04g07260
Os.15125.1.S1_x_at--667--7971NONE
GGATGAATGATTTGGCAGGTATATA
NONE
Target Sequence 
TGGCGGCGATGCTACGTGACAACGCCTACAANGGCGATCAGAATGTGAGGAGCCATGNCGTCTTCGCCGGNGCTNTGCTC
GCCGACGAGCTGCTGCTGAAGGAGAAGGANCGNGCGGATGTCGTCGGACGGCGGCGGCGNNNGGTGGTTGTTGCCGGTGA
TCTTCGAGGTGTGGGTGGAGATGCTGCTGTACGCCGGCAACCGGTGCAGCAGGGAGTCGCATGCGAAGCAGCTCAACANG
TGGNGGTGAGCTCATCACNGCTGGTGTGGCTGTTGGCTGAACACGCTGGGCTGTATCGTATAAACAAANCTAAGCAGCAT
TTNAAGTGTGCTGAATATGCTANTGNTATGGTATANTTTACTGAGGTAGACTNTGTCTCATTTTTGTTTTTTTGGGCCTA
CAAGTCTGCAACACCGGAACATCCCAATGGATGAATGATTTGGCAGGTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15125.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis