Browse Element(s) Details


OsAffx.25907.1.S1_at

Description tigr:9632.m00640
TID=OsAffx.25907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein
LOC_Os04g07250OsAffx.25903.4.S1_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07250OsAffx.25903.5.S1_s_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07260OsAffx.13703.1.S1_x_at11/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_x_at10/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.15125.1.S1_at8/114+3840464..3845035hypothetical protein
LOC_Os04g07260Os.26930.1.S2_x_at1/114+3840464..3845035hypothetical protein
LOC_Os04g07269OsAffx.1198.1.S1_at1/114+3848303..3849160NA
LOC_Os04g07280Os.47568.1.A1_s_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.1.S1_x_at11/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.30400.1.S1_x_at2/114+3853075..3856415expressed protein
LOC_Os04g07280OsAffx.25907.2.S1_at1/114+3853075..3856415expressed protein
LOC_Os04g07290OsAffx.21897.5.S1_x_at4/114+3858503..3861427retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07300NANA4+3861743..3867852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07310NANA4+3873295..3873835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07320NANA4+3874876..3880920retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25907.1.S1_at--168--7931Chr04:3855823..3855847 (25 bp)
GGTTGGAGATATTAATAGCGGAGCA
LOC_Os04g07280
OsAffx.25907.1.S1_at--210--131Chr04:3855833..3855857 (25 bp)
ATTAATAGCGGAGCAGAAACATAGC
LOC_Os04g07280
OsAffx.25907.1.S1_at--921--10851Chr04:3855903..3855927 (25 bp)
TTGGCAGAGGCAAATGAGACAGCTG
LOC_Os04g07280
OsAffx.25907.1.S1_at--587--3431Chr04:3855907..3855931 (25 bp)
CAGAGGCAAATGAGACAGCTGTGAA
LOC_Os04g07280
OsAffx.25907.1.S1_at--1149--8851Chr04:3856127..3856151 (25 bp)
TGATGCTAAGCATTCTCTCCTAAAT
LOC_Os04g07280
OsAffx.25907.1.S1_at--64--6351Chr04:3856128..3856152 (25 bp)
GATGCTAAGCATTCTCTCCTAAATG
LOC_Os04g07280
OsAffx.25907.1.S1_at--653--631Chr04:3856129..3856153 (25 bp)
ATGCTAAGCATTCTCTCCTAAATGA
LOC_Os04g07280
OsAffx.25907.1.S1_at--1035--4831Chr04:3856131..3856155 (25 bp)
GCTAAGCATTCTCTCCTAAATGATG
LOC_Os04g07280
OsAffx.25907.1.S1_at--796--9791Chr04:3856133..3856157 (25 bp)
TAAGCATTCTCTCCTAAATGATGAG
LOC_Os04g07280
OsAffx.25907.1.S1_at--273--1551Chr04:3856135..3856159 (25 bp)
AGCATTCTCTCCTAAATGATGAGAA
LOC_Os04g07280
OsAffx.25907.1.S1_at--505--9771Chr04:3856241..3856265 (25 bp)
TAAGGCTGAAAAGGATGAAGAGGCT
LOC_Os04g07280
Target Sequence 
GGTTGGAGATATTAATAGCGGAGCAGAAACATAGCATGTCTGAATTGGAGGTTAAAAGGCTCAAGATGGAACTTGGTGCA
TTGGCAGAGGCAAATGAGACAGCTGTGAAGTCATTTGATGCTGAGAAGGAAAAATTCATCAGGGAAATGGGGGACCTCAA
GAGGAAGATAGAGGAAATCCAGGTCAGCAAGGAAGCTGCTGAGGAAGTAGGGCGCAACAAGAATGCAGAGGCTGATAGGC
TGAGGGCTGAGTTGGTGAAGATCCAAGTTTCTTTATCGCAACTACAAGCATCCTATAATGAACTTGATGCTAAGCATTCT
CTCCTAAATGATGAGAAGAATTCAGCCCAGAAAGCATTAGATGTTGAGAAGGTTGAAGCATATAAGCTGAAGTCAAAATT
TGAGGAACTTGAAAATTATAAGGCTGAAAAGGATGAAGAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis