Browse Element(s) Details


OsAffx.13718.1.S1_at

Description tigr:9632.m00703
TID=OsAffx.13718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0790011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07870NANA4+4180264..4181938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07880OsAffx.13716.1.S1_at11/114+4188524..4189768hypothetical protein
LOC_Os04g07890OsAffx.13717.1.S1_s_at11/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_at1/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_x_at1/114+4203785..4205725expressed protein
LOC_Os04g07900OsAffx.13718.1.S1_at11/114+4205992..4206228hypothetical protein
LOC_Os04g07910OsAffx.13719.1.S1_at10/114+4207986..4208875hypothetical protein
LOC_Os04g07920OsAffx.13720.1.S1_at11/114+4212894..4213983hypothetical protein
LOC_Os04g07920OsAffx.13703.1.S1_x_at1/114+4212894..4213983hypothetical protein
LOC_Os04g07930OsAffx.25916.1.S1_at11/114+4218371..4218922hypothetical protein
LOC_Os04g07944Os.47004.1.S1_at1/114+4221459..4225524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07944OsAffx.24330.2.S1_at1/114+4221459..4225524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07960OsAffx.25917.1.S1_at11/114+4226450..4226830hypothetical protein
LOC_Os04g07970OsAffx.25918.1.S1_at11/114+4230429..4231108hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13718.1.S1_at--28--811Chr04:4206159..4206183 (25 bp)
ATGGGCATGGGAATGCCATACGCAT
LOC_Os04g07900
OsAffx.13718.1.S1_at--67--5271Chr04:4206149..4206173 (25 bp)
GAATGCCATACGCATGGGCAGACCT
LOC_Os04g07900
OsAffx.13718.1.S1_at--167--9951Chr04:4206141..4206165 (25 bp)
TACGCATGGGCAGACCTAGGCCATA
LOC_Os04g07900
OsAffx.13718.1.S1_at--621--1371Chr04:4206130..4206154 (25 bp)
AGACCTAGGCCATAGGCTGCTCGGG
LOC_Os04g07900
OsAffx.13718.1.S1_at--702--8391Chr04:4206101..4206125 (25 bp)
GGCCCGAGCCCCAAGGCGTAGGAAT
LOC_Os04g07900
OsAffx.13718.1.S1_at--536--4531Chr04:4206094..4206118 (25 bp)
GCCCCAAGGCGTAGGAATTGTCGAA
LOC_Os04g07900
OsAffx.13718.1.S1_at--897--8211Chr04:4206081..4206105 (25 bp)
GGAATTGTCGAATTGAAGCTCACTA
LOC_Os04g07900
OsAffx.13718.1.S1_at--917--51Chr04:4206070..4206094 (25 bp)
ATTGAAGCTCACTATGCCCAACAAA
LOC_Os04g07900
OsAffx.13718.1.S1_at--65--9172Chr04:4206056..4206080 (25 bp)
TGCCCAACAAACTTTCACCATATAA
LOC_Os04g07900
OsAffx.13718.1.S1_at--974--231Chr04:4206037..4206061 (25 bp)
ATATAATGGTGGTATTGGGCCTCAA
LOC_Os04g07900
OsAffx.13718.1.S1_at--1118--10211Chr04:4206025..4206049 (25 bp)
TATTGGGCCTCAAGGAAAACCTGGG
LOC_Os04g07900
Target Sequence 
ATGGGCATGGGAATGCCATACGCATGGGCAGACCTAGGCCATAGGCTGCTCGGGCCATGGCCCGAGCCCCAAGGCGTAGG
AATTGTCGAATTGAAGCTCACTATGCCCAACAAACTTTCACCATATAATGGTGGTATTGGGCCTCAAGGAAAACCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis