Browse Element(s) Details


OsAffx.13735.1.S1_at

Description tigr:9632.m00842
TID=OsAffx.13735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0972011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09654Os.10277.1.S1_at9/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09654Os.19369.1.S1_at1/114+5158495..5166516O-methyltransferase family protein, expressed
LOC_Os04g09670NANA4+5169870..5171591Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os04g09680NANA4+5174012..5174764O-methyltransferase family protein
LOC_Os04g09690OsAffx.22368.1.S1_x_at1/114+5176458..5179414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09700NANA4+5180295..5182271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09710OsAffx.20565.1.S1_at1/114+5182907..5185834retrotransposon protein, putative, unclassified
LOC_Os04g09720OsAffx.13735.1.S1_at11/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09720Os.5061.1.S1_s_at10/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09730OsAffx.13736.1.S1_at11/114+5202262..5202486hypothetical protein
LOC_Os04g09740NANA4+5204532..5205224transposon protein, putative, Pong sub-class, expressed
LOC_Os04g09750NANA4+5207079..5208881hypothetical protein
LOC_Os04g09760Os.46012.2.S1_x_at10/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.46012.3.S1_x_at6/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.27088.1.A1_x_at5/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.54691.1.S1_x_at1/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09770OsAffx.3756.1.S1_at11/114+5221481..5223329Ser/Thr protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13735.1.S1_at--664--9411Chr04:5192006..5192173 (25 bp)
TCGTCCATTTGTAGGAATGCCACCT
LOC_Os04g09720
OsAffx.13735.1.S1_at--377--591Chr04:5191990..5192014 (25 bp)
ATGCCACCTATGTTCTGTCCAAAAT
LOC_Os04g09720
OsAffx.13735.1.S1_at--602--6271Chr04:5191821..5191845 (25 bp)
GATGTAATCATGACCTTCTTTACAA
LOC_Os04g09720
OsAffx.13735.1.S1_at--1107--3271Chr04:5191792..5191816 (25 bp)
CAAATCGTTAGTTCAGTGGAGTATC
LOC_Os04g09720
OsAffx.13735.1.S1_at--1076--8031Chr04:5191775..5191799 (25 bp)
GGAGTATCATTTAAGCCTGATTACC
LOC_Os04g09720
OsAffx.13735.1.S1_at--1157--8791Chr04:5191758..5191782 (25 bp)
TGATTACCCAAGGATACCGAGGCTT
LOC_Os04g09720
OsAffx.13735.1.S1_at--778--4231Chr04:5191433..5191766 (25 bp)
CCGAGGCTTGGTATACAGTGGAGAT
LOC_Os04g09720
OsAffx.13735.1.S1_at--798--6431Chr04:5191411..5191435 (25 bp)
GATCATGACAGTGTAGTATCTCTTA
LOC_Os04g09720
OsAffx.13735.1.S1_at--284--1191Chr04:5191397..5191421 (25 bp)
AGTATCTCTTATTGGCACCCAAGGA
LOC_Os04g09720
OsAffx.13735.1.S1_at--146--4531Chr04:5190188..5190212 (25 bp)
GCCCCGGAGTACATGCCAAAGGAGT
LOC_Os04g09720
OsAffx.13735.1.S1_at--1023--2911Chr04:5190170..5190194 (25 bp)
AAGGAGTGTCTTGCTATGGTTGATA
LOC_Os04g09720
Target Sequence 
TCGTCCATTTGTAGGAATGCCACCTATGTTCTGTCCAAAATATGGGCAAACGACGAAGCTGTAAGGGAGAGTTTGGGTAT
TCACAAGGGGACAGTAACAACATGGGAAAGATGTAATCATGACCTTCTTTACAAAAAGCAAATCGTTAGTTCAGTGGAGT
ATCATTTAAGCCTGATTACCCAAGGATACCGAGGCTTGGTATACAGTGGAGATCATGACAGTGTAGTATCTCTTATTGGC
ACCCAAGGATGGCTTAGATCTCTTAACCTGTCCATCACACATGGTTGGCGACCATGGTACGTCAACAGCCAAGTGGTAGG
GTTCACAAGAACTTACTCCAATAACTTGACATACGCAACTGTGAAGGGTGCTGGGCACACAGCCCCGGAGTACATGCCAA
AGGAGTGTCTTGCTATGGTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis