Browse Element(s) Details


OsAffx.13742.1.S1_at

Description tigr:9632.m00877
TID=OsAffx.13742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1005011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10030NANA4+5375935..5379267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10040OsAffx.8939.1.S1_x_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.8939.1.S1_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.1436.1.S1_x_at1/114+5382592..5384370hypothetical protein
LOC_Os04g10050OsAffx.13742.1.S1_at11/114+5399524..5399949hypothetical protein
LOC_Os04g10060Os.24822.1.A1_at11/114+5408356..5414032Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g10070OsAffx.22699.1.S1_x_at3/114+5417482..5421382retrotransposon protein, putative, unclassified
LOC_Os04g10080OsAffx.1196.1.S1_at2/114+5424186..5425436hypothetical protein
LOC_Os04g10080OsAffx.1196.1.S1_x_at1/114+5424186..5425436hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13742.1.S1_at--457--5311Chr04:5399893..5399917 (25 bp)
GAAGGTGGCTCAGGACCCTATGATT
LOC_Os04g10050
OsAffx.13742.1.S1_at--513--9631Chr04:5399884..5399908 (25 bp)
TCAGGACCCTATGATTGCCAGCGAT
LOC_Os04g10050
OsAffx.13742.1.S1_at--639--5811Chr04:5399880..5399904 (25 bp)
GACCCTATGATTGCCAGCGATCTAG
LOC_Os04g10050
OsAffx.13742.1.S1_at--788--10691Chr04:5399870..5399894 (25 bp)
TTGCCAGCGATCTAGGGCATGGCGA
LOC_Os04g10050
OsAffx.13742.1.S1_at--227--5011Chr04:5399854..5399878 (25 bp)
GCATGGCGACGCTAACCGAGGGCAC
LOC_Os04g10050
OsAffx.13742.1.S1_at--336--3711Chr04:5399843..5399867 (25 bp)
CTAACCGAGGGCACCAGAACGAGGG
LOC_Os04g10050
OsAffx.13742.1.S1_at--1143--891Chr04:5399653..5399677 (25 bp)
AGGCGGTGACGAAACTTGGCGACAA
LOC_Os04g10050
OsAffx.13742.1.S1_at--672--2372Chr12:8230151..8230174 (24 bp)
AAACTTGGCGACAATGGGAGGTGCA
NONE
OsAffx.13742.1.S1_at--85--3193Chr01:21306793..21307052 (25 bp)
CACGACGACGAACTTCGGGTTGACG
NONE
OsAffx.13742.1.S1_at--744--1871Chr04:5399565..5399589 (25 bp)
ACGATGGTGCCCTGGTGGATTTACG
LOC_Os04g10050
OsAffx.13742.1.S1_at--847--4191Chr04:5399556..5399580 (25 bp)
CCCTGGTGGATTTACGTGGCGATGA
LOC_Os04g10050
Target Sequence 
GAAGGTGGCTCAGGACCCTATGATTGCCAGCGATCTAGGGCATGGCGACGCTAACCGAGGGCACCAGAACGAGGGGAGCT
CACTGAGGGGCGGCAAGACGAAGGACGGTGACGGAAAACGGCCGGCGTCGAGGTTGGAGTGGCGACGGGGTACTGATCGA
CGGTGGCGGTGGCGTTTCGGCAACGGGAGACGACAACCGAGGGGTGGACGGCCTTCACCTCGCAGCTGCAAACCCAAAGG
AGGCGGTGACGAAACTTGGCGACAATGGGAGGTGCAGCAGGGCCTCGCTGGAGATCAAAACACGACGACGAACTTCGGGT
TGACGGCGACGATGGTGCCCTGGTGGATTTACGTGGCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis