Browse Element(s) Details


OsAffx.13783.1.S1_at

Description tigr:9632.m01071
TID=OsAffx.13783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=o-methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1197011/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11920NANA4+6520383..6523255retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11930Os.10827.1.S1_x_at10/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11930Os.46055.2.S1_x_at5/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11940NANA4+6531151..6531423hypothetical protein
LOC_Os04g11950OsAffx.25936.1.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.7.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.2.S1_x_at5/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.5.S1_x_at2/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11956OsAffx.3771.1.S1_at11/114+6538167..6538885expressed protein
LOC_Os04g11962NANA4+6540432..6540785hypothetical protein
LOC_Os04g11970OsAffx.13783.1.S1_at11/114+6544793..6546274O-methyltransferase family protein
LOC_Os04g11980Os.18013.1.S1_x_at11/114+6547895..6548662expressed protein
LOC_Os04g11990OsAffx.25990.1.S1_at11/114+6555938..6559384hypothetical protein
LOC_Os04g12000OsAffx.8479.1.S1_at10/114+6566958..6571307retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13783.1.S1_at--1105--3371Chr04:6545080..6545104 (25 bp)
CAGCCTAAGTCCGTGGTTCAGGGAT
LOC_Os04g11970
OsAffx.13783.1.S1_at--1075--1051Chr04:6545099..6545123 (25 bp)
AGGGATGGACGAAACGCCAGCCCAA
LOC_Os04g11970
OsAffx.13783.1.S1_at--1117--4571Chr04:6545126..6545150 (25 bp)
GCGCTCTTCGAGATGGCTCATGGCA
LOC_Os04g11970
OsAffx.13783.1.S1_at--580--1551Chr04:6545225..6545249 (25 bp)
AGCTTCCTCATGGAGATCGCGCTAA
LOC_Os04g11970
OsAffx.13783.1.S1_at--862--1372Chr04:6545251..6545275 (25 bp)
AGAGCGCGGTGATGTCGTCTTCCGA
LOC_Os04g11970
OsAffx.13783.1.S1_at--903--9271Chr04:6545271..6545295 (25 bp)
TCCGAGGGCTTAGATCGCTGGTCGA
LOC_Os04g11970
OsAffx.13783.1.S1_at--57--4391Chr04:6545333..6545357 (25 bp)
GCCAAGGCGTTTCCGGACATCAAGT
LOC_Os04g11970
OsAffx.13783.1.S1_at--196--9071Chr04:6545364..6545388 (25 bp)
TGCTTGACCTCCCACATGTGATCAG
LOC_Os04g11970
OsAffx.13783.1.S1_at--1095--3331Chr04:6545407..6545431 (25 bp)
CACGGTGTGTTTTATCGCTGGCGAC
LOC_Os04g11970
OsAffx.13783.1.S1_at--1076--6851Chr04:6545434..6545458 (25 bp)
GTTTGAGGATATTCCTCCAGCCGAT
LOC_Os04g11970
OsAffx.13783.1.S1_at--886--3371Chr04:6545451..6545473 (23 bp)
CAGCCGATGCGGTTTTACTCAAGCA
LOC_Os04g11970
Target Sequence 
CAGCCTAAGTCCGTGGTTCAGGGATGGACGAAACGCCAGCCCAACGGCGCTCTTCGAGATGGCTCATGGCATGCCACCGT
GGGAGATGATGAAGAGGGACGACACGATGAACTCGGCCCTCAACGACGCGTGCGTCGCCGACAGCAGCTTCCTCATGGAG
ATCGCGCTAAGAGAGCGCGGTGATGTCGTCTTCCGAGGGCTTAGATCGCTGGTCGATGTCGGCGGCGGCCATGGAGGAGC
CGCGATGGCCATCGCCAAGGCGTTTCCGGACATCAAGTGCAGCGTGCTTGACCTCCCACATGTGATCAGCCAGGCACCCG
ACGATGGCACGGTGTGTTTTATCGCTGGCGACATGTTTGAGGATATTCCTCCAGCCGATGCGGTTTTACTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis