Browse Element(s) Details


OsAffx.25990.1.S1_at

Description tigr:9632.m01073
TID=OsAffx.25990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1199011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11940NANA4+6531151..6531423hypothetical protein
LOC_Os04g11950OsAffx.25936.1.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.7.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.2.S1_x_at5/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.5.S1_x_at2/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11956OsAffx.3771.1.S1_at11/114+6538167..6538885expressed protein
LOC_Os04g11962NANA4+6540432..6540785hypothetical protein
LOC_Os04g11970OsAffx.13783.1.S1_at11/114+6544793..6546274O-methyltransferase family protein
LOC_Os04g11980Os.18013.1.S1_x_at11/114+6547895..6548662expressed protein
LOC_Os04g11990OsAffx.25990.1.S1_at11/114+6555938..6559384hypothetical protein
LOC_Os04g12000OsAffx.8479.1.S1_at10/114+6566958..6571307retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12010Os.49562.1.A1_at11/114+6573208..6575844HGA1, putative, expressed
LOC_Os04g12020OsAffx.25991.1.S1_at11/114+6578295..6579432hypothetical protein
LOC_Os04g12030Os.31312.2.S1_x_at5/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12030Os.31312.5.S1_x_at4/114+6582691..6585950retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25990.1.S1_at--513--651Chr04:6556486..6556510 (25 bp)
ATGCAGAATGTTTCCTACTCGCTAC
LOC_Os04g11990
OsAffx.25990.1.S1_at--725--9911Chr04:6556471..6556495 (25 bp)
TACTCGCTACTGGTGACACACATTG
LOC_Os04g11990
OsAffx.25990.1.S1_at--204--10791Chr04:6556428..6556452 (25 bp)
TTGTTGTTCTGCTACTGGTGGCTAA
LOC_Os04g11990
OsAffx.25990.1.S1_at--1073--5551Chr04:6556387..6556411 (25 bp)
GAAAGCCGACATATACGCCCAGTGA
LOC_Os04g11990
OsAffx.25990.1.S1_at--250--4731Chr04:6556313..6556337 (25 bp)
GCTGGTGGATCCAATCTCATGCATC
LOC_Os04g11990
OsAffx.25990.1.S1_at--464--10431Chr04:6556283..6556307 (25 bp)
TTATGCCACCCTAATTGAACTGCCA
LOC_Os04g11990
OsAffx.25990.1.S1_at--976--51Chr04:6556270..6556294 (25 bp)
ATTGAACTGCCAGCTGATCCTTTTC
LOC_Os04g11990
OsAffx.25990.1.S1_at--735--8031Chr04:6556158..6556182 (25 bp)
GGAGTGCTCGCCTAAACAAGTTGAC
LOC_Os04g11990
OsAffx.25990.1.S1_at--1096--5691Chr04:6556136..6556160 (25 bp)
GACTAAGGGTTTCTTGTCTCCTAAT
LOC_Os04g11990
OsAffx.25990.1.S1_at--857--10791Chr04:6556123..6556147 (25 bp)
TTGTCTCCTAATCCCAATGTTGCAA
LOC_Os04g11990
OsAffx.25990.1.S1_at--610--2311Chr04:6556047..6556071 (25 bp)
AAAGTGGTATAATCTCTTCCCTGCG
LOC_Os04g11990
Target Sequence 
ATGCAGAATGTTTCCTACTCGCTACTGGTGACACACATTGTTCAATTTGCTTTGTTGGTTGTTGTTCTGCTACTGGTGGC
TAAGATTGAAAGGCATGGGGAAAGCCGACATATACGCCCAGTGACAACCTCGGCCCAGTTGGGAGTGGAGACCCAACAAT
TTGAAGGTGTTATGCTGGTGGATCCAATCTCATGCATCCCTCCTTATGCCACCCTAATTGAACTGCCAGCTGATCCTTTT
CCTCCAGATAATATTTCAAGTATACCTTCGCTCAAAAAGTGCAAGAAATCCAAGGGAACAAATGTTGTCATTACTGACAC
AGATAGAAGGAGTGCTCGCCTAAACAAGTTGACTAAGGGTTTCTTGTCTCCTAATCCCAATGTTGCAATTGGCAAGGCAA
GGGGGAAGAGTGCAAAAATACTAAAGTTAATTGCTGAACAAAGTGGTATAATCTCTTCCCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis