Browse Element(s) Details


Os.49562.1.A1_at

Description gb:AK121999.1
DB_XREF= gi:37991622
TID=Os.49562.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110G11, full insert sequence.
FL= gb:AK121999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1201011/11HGA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11980Os.18013.1.S1_x_at11/114+6547895..6548662expressed protein
LOC_Os04g11990OsAffx.25990.1.S1_at11/114+6555938..6559384hypothetical protein
LOC_Os04g12000OsAffx.8479.1.S1_at10/114+6566958..6571307retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12010Os.49562.1.A1_at11/114+6573208..6575844HGA1, putative, expressed
LOC_Os04g12020OsAffx.25991.1.S1_at11/114+6578295..6579432hypothetical protein
LOC_Os04g12030Os.31312.2.S1_x_at5/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12030Os.31312.5.S1_x_at4/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12040NANA4+6586741..6592739retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49562.1.A1_at--37--3351Chr04:6573779..6573803 (25 bp)
CACGGCCGCGGATGATGATCCTGGA
LOC_Os04g12010
Os.49562.1.A1_at--1023--8531Chr04:6573758..6573782 (25 bp)
TGGAGCGGACCAACAGCCGGAAGCT
LOC_Os04g12010
Os.49562.1.A1_at--972--9251Chr04:6573641..6573665 (25 bp)
TCGCCCGGGAGGTGAACTCGTACGA
LOC_Os04g12010
Os.49562.1.A1_at--669--9111Chr04:6573554..6573578 (25 bp)
TGCTGCTGCAGATCGTGCCGTACGG
LOC_Os04g12010
Os.49562.1.A1_at--1076--4791Chr04:6573437..6573461 (25 bp)
GCTCGCTGATGGACGTGTTCGGCAA
LOC_Os04g12010
Os.49562.1.A1_at--1127--5371Chr04:6573337..6573361 (25 bp)
GAAGCAGGACGTGCGGGTCAACATT
LOC_Os04g12010
Os.49562.1.A1_at--475--10431Chr04:6573305..6573329 (25 bp)
TTAGGCCGTTTCTGACGCAGGCGTT
LOC_Os04g12010
Os.49562.1.A1_at--1144--6611Chr04:6573283..6573307 (25 bp)
GTTGGAGCACCTGCAGTAGCGATCC
LOC_Os04g12010
Os.49562.1.A1_at--377--6971Chr04:6573268..6573292 (25 bp)
GTAGCGATCCTTTTTCTCGATGAAC
LOC_Os04g12010
Os.49562.1.A1_at--8--331Chr04:6573225..6573249 (25 bp)
ATAACACGACGGTGCGTTTTCCTAT
LOC_Os04g12010
Os.49562.1.A1_at--825--7291Chr04:6573214..6573238 (25 bp)
GTGCGTTTTCCTATTCTTATTCTTT
LOC_Os04g12010
Target Sequence 
CACGGCCGCGGATGATGATCCTGGAGCGGACCAACAGCCGGAAGCTGATGAACCTCCCGGAGGTCGCCGCGGCCGCGCGA
GCGGCGGGGTTCGAGGTGACCGTCGCCGGCGGCCGTCCGACGAGCACCTACGACGAGTTCGCCCGGGAGGTGAACTCGTA
CGACGTGATGGTGGGCGTGCACGGCGCCGGGCTGACCAACTGCGTGTTCCTCCCCACGGGGGCCGTGCTGCTGCAGATCG
TGCCGTACGGCCGGCTCGANAGCATCGCGCANACGGACTTCGGCGAGCCGGCGCGAGACATGGGGCTCCGGTACATCNAG
TACNACATCGCCGCCGACGAGAGCTCGCTGATGGACGTGTTCGGCAAGGACCACCCCATGATCAAGGACCCCGTCGCCGT
GCACTTGAGCGGGTGGGGAAACGTGGCCGAGTGGTACCTCGGGAAGCAGGACGTGCGGGTCAACATTGAGCGGTTTAGGC
CGTTTCTGACGCAGGCGTTGGAGCACCTGCAGTAGCGATCCTTTTTCTCGATGAACAAGCAAAAATGTATATGCATAACA
CGACGGTGCGTTTTCCTATTCTTATTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49562.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis