Browse Element(s) Details


Os.18013.1.S1_x_at

Description gb:AK073111.1
DB_XREF= gi:32983134
TID=Os.18013.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022M24, full insert sequence.
FL= gb:AK073111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1198011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11920NANA4+6520383..6523255retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11930Os.10827.1.S1_x_at10/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11930Os.46055.2.S1_x_at5/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11940NANA4+6531151..6531423hypothetical protein
LOC_Os04g11950OsAffx.25936.1.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.7.S1_s_at10/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.2.S1_x_at5/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11950OsAffx.25936.5.S1_x_at2/114+6533050..6536088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11956OsAffx.3771.1.S1_at11/114+6538167..6538885expressed protein
LOC_Os04g11962NANA4+6540432..6540785hypothetical protein
LOC_Os04g11970OsAffx.13783.1.S1_at11/114+6544793..6546274O-methyltransferase family protein
LOC_Os04g11980Os.18013.1.S1_x_at11/114+6547895..6548662expressed protein
LOC_Os04g11990OsAffx.25990.1.S1_at11/114+6555938..6559384hypothetical protein
LOC_Os04g12000OsAffx.8479.1.S1_at10/114+6566958..6571307retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12010Os.49562.1.A1_at11/114+6573208..6575844HGA1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18013.1.S1_x_at--112--3813Chr12:25258704..25258729 (24 bp)
CTCCCAGATTTGGCCAGAGGGCGGT
NONE
Os.18013.1.S1_x_at--540--3931Chr04:6548126..6548150 (25 bp)
CGGCGGCGTTATGCGGTGGGTGGAA
LOC_Os04g11980
Os.18013.1.S1_x_at--155--6172Chr04:6548218..6548242 (25 bp)
GAGGAGGCCGGTGGCCAGCGTCTCG
LOC_Os04g11980
Os.18013.1.S1_x_at--58--4311Chr04:6548361..6548385 (25 bp)
GACTACCGGCGGTGACGGCAAACTC
LOC_Os04g11980
Os.18013.1.S1_x_at--374--9952Chr10:13342653..13343081 (25 bp)
TACCGGCGGTGACGGCAAACTCCCT
NONE
Os.18013.1.S1_x_at--561--7891Chr04:6548420..6548444 (25 bp)
GGTTCAGAGAGAGGCTGGCGGCGGC
LOC_Os04g11980
Os.18013.1.S1_x_at--564--3931Chr04:6548446..6548543 (25 bp)
CGGCGACAAGTGCTGCATCCAGGAT
LOC_Os04g11980
Os.18013.1.S1_x_at--1153--4591Chr04:6548448..6548545 (25 bp)
GCGACAAGTGCTGCATCCAGGATGG
LOC_Os04g11980
Os.18013.1.S1_x_at--724--3451Chr04:6548548..6548572 (25 bp)
CAGTGGTGATGGAGTAGCACCCTTG
LOC_Os04g11980
Os.18013.1.S1_x_at--244--1191Chr04:6548560..6548584 (25 bp)
AGTAGCACCCTTGGATGATTTTTAT
LOC_Os04g11980
Os.18013.1.S1_x_at--498--5091Chr04:6548564..6548588 (25 bp)
GCACCCTTGGATGATTTTTATTTGA
LOC_Os04g11980
Target Sequence 
CTCCCAGATTTGGCCAGAGGGCGGTTGGGGGAGGGCGGCGGGGCGCGGTGGGGCGGTCGGCAGCATGGCGCGGCGGGGCG
GTCGGCGGCGTTATGCGGTGGGTGGAAGNCGGTGGGGCGGACGGCGGCTCCCCTCCGTCCCTCCCTCCCAGATCTGGCCG
GAGGGGGGAGGGGGGAGGAGGCCGGTGGCCAGCGTCTCGGGGTGGATGGCGGGNGGACGGCAGCGGCTCCCCTCCCTCCC
TCCCTCCCAGATCTGGCCGGAGAGCGGAGGGGGGAGATTGGTGGCCGGCCAGCGGCCCGGGGGCAGAAGGCGGCGGCGAC
TACCGGCGGTGACGGCAAACTCCCTCCCTACTTGCCTCTCACCCCGGCCCTGAGGGGGTTCAGAGAGAGGCTGGCGGCGG
CTCGGCGACAAGTGCTGCATCCAGGATGGGGCAGTGGTGATGGAGTAGCACCCTTGGATGATTTTTATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18013.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis