Browse Element(s) Details


OsAffx.13916.1.S1_at

Description tigr:9632.m02037
TID=OsAffx.13916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to bacterial blight-resistance protein Xa1 - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2209011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22050OsAffx.3852.1.S1_at11/114+12459678..12461276Zinc knuckle family protein
LOC_Os04g22050Os.53180.1.S1_at1/114+12459678..12461276Zinc knuckle family protein
LOC_Os04g22060NANA4+12462724..12469869retrotransposon protein, putative, unclassified, expressed
LOC_Os04g22070OsAffx.26092.1.S1_at10/114+12470755..12472510hypothetical protein
LOC_Os04g22080OsAffx.31869.4.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22080OsAffx.31869.5.S1_x_at1/114+12476271..12480195retrotransposon protein, putative, unclassified
LOC_Os04g22090OsAffx.13916.1.S1_at11/114+12482724..12488200NB-ARC domain containing protein, expressed
LOC_Os04g22100OsAffx.3853.1.S1_at11/114+12493787..12496380BED zinc finger family protein, expressed
LOC_Os04g22110Os.47999.3.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22110OsAffx.8338.1.S1_x_at1/114+12498163..12506746retrotransposon protein, putative, unclassified
LOC_Os04g22120Os.51339.1.S1_at11/114+12509573..12514925Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13916.1.S1_at--425--3151Chr04:12484381..12484405 (25 bp)
AATTCATAGATTTTCCTGCCGGATT
LOC_Os04g22090
OsAffx.13916.1.S1_at--998--6511Chr04:12484326..12484350 (25 bp)
GATTTGGCATTGTACTCGCATCACA
LOC_Os04g22090
OsAffx.13916.1.S1_at--426--2911Chr04:12484302..12484326 (25 bp)
AAGGTTGCCAGAAGAGGGCCTCCCA
LOC_Os04g22090
OsAffx.13916.1.S1_at--635--5191Chr04:12483797..12484231 (25 bp)
GCAATCTGAACCACATCATCACTAT
LOC_Os04g22090
OsAffx.13916.1.S1_at--96--371Chr04:12483747..12483771 (25 bp)
ATCAGCATTTTCACCGTTCAACAAT
LOC_Os04g22090
OsAffx.13916.1.S1_at--542--6751Chr04:12483732..12483756 (25 bp)
GTTCAACAATTTGCAGCCCGTCGAT
LOC_Os04g22090
OsAffx.13916.1.S1_at--1149--1651Chr04:12483718..12483742 (25 bp)
AGCCCGTCGATTCTTGTTGGAGTTG
LOC_Os04g22090
OsAffx.13916.1.S1_at--370--6471Chr04:12483684..12483708 (25 bp)
GATAAATCTTCCACTGTGTCTCGAC
LOC_Os04g22090
OsAffx.13916.1.S1_at--296--371Chr04:12483650..12483674 (25 bp)
ATCAATATGCAGCTCGATCTCACCA
LOC_Os04g22090
OsAffx.13916.1.S1_at--783--7351Chr04:12483090..12483114 (25 bp)
GTGAAGTACCCTACAAGCGCACGTG
LOC_Os04g22090
OsAffx.13916.1.S1_at--1082--4531Chr04:12483066..12483086 (21 bp)
GCCCGATGGATTTGTGTGCTGAGAT
LOC_Os04g22090
Target Sequence 
AATTCATAGATTTTCCTGCCGGATTACACCGCCTTCCCTCACTCAAGAGGTTGGAGATTTGGCATTGTACTCGCATCACA
AGGTTGCCAGAAGAGGGCCTCCCACCATCTCTGGAAGAACTCGATATCAATTTATGCAGCAAAGAGCTAACTTACCAATG
CAGAATGCTACCAAGCAATCTGAACCACATCATCACTATTGTTAGCCAAGAAAGCATCAATGACATCAGCATTTTCACCG
TTCAACAATTTGCAGCCCGTCGATTCTTGTTGGAGTTGTTGCAGATCGATAAATCTTCCACTGTGTCTCGACATCCATCT
CATCAATATGCAGCTCGATCTCACCACCAAGTGGCGGACCTAGAGAAAGTAAATTCGCATGCGCCGTGCCACGCCGCCAA
ATGGCCAACAGGAAAGTACGAGACTGGAGATGAGAAACAGAGAAAACTAGTGAAGTACCCTACAAGCGCACGTGCATGCC
CGATGGATTTGTGTGCTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis