Browse Element(s) Details


OsAffx.13934.1.S1_at

Description tigr:9632.m02144
TID=OsAffx.13934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2312011/11hypothetical protein
LOC_Os09g365301/11exodeoxyribonuclease III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23080OsAffx.31869.5.S1_x_at6/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080Os.48015.1.A1_at4/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080Os.48015.1.A1_x_at4/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080OsAffx.31869.2.S1_at1/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23080OsAffx.31869.4.S1_x_at1/114+13095409..13097869retrotransposon protein, putative, unclassified
LOC_Os04g23090OsAffx.28472.1.S1_x_at11/114+13099683..13099883hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_x_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23109NANA4+13113156..13114003NA
LOC_Os04g23120OsAffx.13934.1.S1_at11/114+13115131..13116702hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_x_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23140Os.27641.1.A1_at11/114+13129401..13130778expressed protein
LOC_Os04g23140OsAffx.3864.1.S1_x_at11/114+13129401..13130778expressed protein
LOC_Os04g23150OsAffx.13935.1.S1_at10/114+13137807..13138793hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13934.1.S1_at--475--3331Chr04:13115161..13115182 (22 bp)
CACTCCCCTCTGAAGGTGGAGGATT
LOC_Os04g23120
OsAffx.13934.1.S1_at--1026--10091Chr04:13116466..13116490 (25 bp)
TATGGCTTAATCTTTCTGAGAGGAG
LOC_Os04g23120
OsAffx.13934.1.S1_at--735--411Chr04:13116496..13116520 (25 bp)
ATCATTAACCCTAGCATAAGACCAT
LOC_Os04g23120
OsAffx.13934.1.S1_at--657--2771Chr04:13116513..13116537 (25 bp)
AAGACCATATGGCAGTCATCTGAGA
LOC_Os04g23120
OsAffx.13934.1.S1_at--1147--5011Chr04:13116524..13116548 (25 bp)
GCAGTCATCTGAGAGCTGATCCAAA
LOC_Os04g23120
OsAffx.13934.1.S1_at--154--6371Chr04:13116541..13116565 (25 bp)
GATCCAAAGGATCTGCAGCTTGCAT
LOC_Os04g23120
OsAffx.13934.1.S1_at--1100--5592Chr04:13116571..13116595 (25 bp)
GAAATTGTTGATAAGCCTACTCTGT
LOC_Os04g23120
OsAffx.13934.1.S1_at--1123--2651Chr04:13116583..13116607 (25 bp)
AAGCCTACTCTGTCATTGGGAGCAA
LOC_Os04g23120
OsAffx.13934.1.S1_at--23--6531Chr04:13116611..13116635 (25 bp)
GATTTGAGACAGATCCTTTGTGGAA
LOC_Os04g23120
OsAffx.13934.1.S1_at--784--8191Chr04:13116632..13116656 (25 bp)
GGAAGTCTGATGAACTGAGTCCTTA
LOC_Os04g23120
OsAffx.13934.1.S1_at--425--2551Chr04:13116644..13116668 (25 bp)
AACTGAGTCCTTATGATTTCTTGCA
LOC_Os04g23120
Target Sequence 
CACTCCCCTCTGAAGGTGGAGGATTATGGCTTAATCTTTCTGAGAGGAGAATCTATCATTAACCCTAGCATAAGACCATA
TGGCAGTCATCTGAGAGCTGATCCAAAGGATCTGCAGCTTGCATTGCAAGAAATTGTTGATAAGCCTACTCTGTCATTGG
GAGCAAAAAGATTTGAGACAGATCCTTTGTGGAAGTCTGATGAACTGAGTCCTTATGATTTCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis