Browse Element(s) Details


OsAffx.13993.1.S1_at

Description tigr:9632.m02550
TID=OsAffx.13993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2710011/11WRKY transcription factor 19, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27034NANA4+15807332..15810057hypothetical protein
LOC_Os04g27050OsAffx.26178.1.S1_at10/114+15812040..15812583hypothetical protein
LOC_Os04g27060Os.11266.1.S1_at11/114+15814091..15817930Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g27070OsAffx.3914.1.S1_at10/114+15819887..15824535Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27080OsAffx.26179.1.S1_at10/114+15826757..15827920hypothetical protein
LOC_Os04g27090OsAffx.13992.1.S1_at11/114+15830085..15830327hypothetical protein
LOC_Os04g27100OsAffx.13993.1.S1_at11/114+15834460..15836334WRKY transcription factor 19, putative
LOC_Os04g27110NANA4+15838404..15840837retrotransposon protein, putative, unclassified
LOC_Os04g27120OsAffx.20387.1.S1_x_at1/114+15841817..15844811transposon protein, putative, unclassified
LOC_Os04g27130NANA4+15845197..15847989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27140NANA4+15851563..15853448retrotransposon protein, putative, unclassified
LOC_Os04g27150NANA4+15857239..15858626expressed protein
LOC_Os04g27160OsAffx.1300.1.S1_at2/114+15859977..15861221hypothetical protein
LOC_Os04g27160OsAffx.9532.1.S1_x_at1/114+15859977..15861221hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006970biological_processresponse to osmotic stress
GO:0046686biological_processresponse to cadmium ion
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13993.1.S1_at--546--5291Chr04:15835576..15835600 (25 bp)
GAATGGATCTGTGAAACTTGCCGAC
LOC_Os04g27100
OsAffx.13993.1.S1_at--843--951Chr04:15834966..15834990 (25 bp)
AGGACATATGGAACGGCAGCTGATA
LOC_Os04g27100
OsAffx.13993.1.S1_at--675--831Chr04:15834940..15834964 (25 bp)
ATGGAGTCTCGGTTGCACAGTCCTG
LOC_Os04g27100
OsAffx.13993.1.S1_at--3--9451Chr04:15834932..15834956 (25 bp)
TCGGTTGCACAGTCCTGGAGATGTT
LOC_Os04g27100
OsAffx.13993.1.S1_at--958--7071Chr04:15834902..15834926 (25 bp)
GTCAACTGCCTTACCCAAATTTAGA
LOC_Os04g27100
OsAffx.13993.1.S1_at--982--5271Chr04:15834713..15834903 (25 bp)
GAATGGGCACAAGCTTTATTTAAGA
LOC_Os04g27100
OsAffx.13993.1.S1_at--59--7771Chr04:15834680..15834704 (25 bp)
GGTGAACCACCAGCAATCCCAAAAT
LOC_Os04g27100
OsAffx.13993.1.S1_at--233--9971Chr04:15834656..15834680 (25 bp)
TACCTTTCAAAGGAGGCTCGTGATT
LOC_Os04g27100
OsAffx.13993.1.S1_at--180--3791Chr04:15834640..15834664 (25 bp)
CTCGTGATTTCATAAGCCAGTGTTT
LOC_Os04g27100
OsAffx.13993.1.S1_at--24--4431Chr04:15834625..15834649 (25 bp)
GCCAGTGTTTGAGACCATATCCGGA
LOC_Os04g27100
OsAffx.13993.1.S1_at--564--10151Chr04:15834608..15834632 (25 bp)
TATCCGGATGATAGACCTTCTGCAT
LOC_Os04g27100
Target Sequence 
GAATGGATCTGTGAAACTTGCCGACTTTGGTCTTGCTAAGCAGATAAACAAATTCAGCATGCTTAAATCATGTGAAGGAA
GTGTTTATTGGATGGCACCCGAGGTTGTCAATCCCAAGAGGACATATGGAACGGCAGCTGATATATGGAGTCTCGGTTGC
ACAGTCCTGGAGATGTTGACACGTCAACTGCCTTACCCAAATTTAGAATGGGCACAAGCTTTATTTAAGATCGGAAGGGG
TGAACCACCAGCAATCCCAAAATACCTTTCAAAGGAGGCTCGTGATTTCATAAGCCAGTGTTTGAGACCATATCCGGATG
ATAGACCTTCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis