Browse Element(s) Details


OsAffx.13996.1.S1_x_at

Description tigr:9632.m02587
TID=OsAffx.13996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2746011/11hypothetical protein
LOC_Os02g203701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27420NANA4+16018961..16025315retrotransposon protein, putative, LINE subclass
LOC_Os04g27430OsAffx.13994.1.S1_at11/114+16026664..16031220Terpene synthase family, metal binding domain containing protein
LOC_Os04g27440NANA4+16042977..16043391retrotransposon protein, putative, unclassified
LOC_Os04g27450OsAffx.13995.1.S1_at11/114+16046319..16047401hypothetical protein
LOC_Os04g27460OsAffx.13996.1.S1_at11/114+16048828..16050250hypothetical protein
LOC_Os04g27460OsAffx.13996.1.S1_x_at11/114+16048828..16050250hypothetical protein
LOC_Os04g27470NANA4+16053324..16053602terpene synthase 7, putative
LOC_Os04g27480Os.9332.2.S1_x_at1/114+16054834..16056239hypothetical protein
LOC_Os04g27490OsAffx.22848.4.S1_at3/114+16058409..16065036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27490OsAffx.22848.4.S1_x_at3/114+16058409..16065036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27490OsAffx.22848.3.S1_x_at1/114+16058409..16065036retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27500NANA4+16069169..16072263transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13996.1.S1_x_at--92--4551Chr04:16048875..16048899 (25 bp)
GCGCCCTGAAGGTGGCCTTGCAACG
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--568--811Chr04:16049191..16049211 (21 bp)
ATGGGTGGCGCCGATGGTGACGAAC
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--607--7372Chr04:16049203..16049227 (25 bp)
GTGACGAACACCGTGGCCTGAAGGT
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--602--3391Chr04:16049287..16049311 (25 bp)
CAGCGGCGATCAAGGCCGTCGGAGT
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--378--8111Chr04:16049913..16049937 (25 bp)
GGACGCTAAGGCCTCGATGGGTGAT
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--327--3391Chr04:16049948..16049972 (25 bp)
CAGCGCCGACGCTCGCTTGGGAGTA
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--345--891Chr04:16049978..16050002 (25 bp)
AGGCCGTGGGCTGCCGTCATCTTGC
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--687--9171Chr04:16049989..16050013 (25 bp)
TGCCGTCATCTTGCCCGGATCTTGG
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--597--411Chr04:16049996..16050020 (25 bp)
ATCTTGCCCGGATCTTGGCATCCCT
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--249--7971Chr04:16050005..16050029 (25 bp)
GGATCTTGGCATCCCTCGAGCTCCT
LOC_Os04g27460
OsAffx.13996.1.S1_x_at--353--5171Chr04:16050033..16050057 (25 bp)
GCAAGGGACGCAGTGCGGCTTCGAC
LOC_Os04g27460
Target Sequence 
GCGCCCTGAAGGTGGCCTTGCAACGTCGGGGAAGGAGGCCGGGACAGCGAGGAGGATGGGTGGCGCCGATGGTGACGAAC
ACCGTGGCCTGAAGGTGGCCTTGCAGTGTCGGGGAAGGAGGTCGGGGCGGCAAGGAGGATGGGGGAAGGCCGGCGCAGCG
GCGATCAAGGCCGTCGGAGTGGAGGAGCCAGAGCAGCGCCGGGCAAAGGAGGAGGGATGGGAGGAAGGGACGCTAAGGCC
TCGATGGGTGATGGGGAGGATGCAGCGCCGACGCTCGCTTGGGAGTAGGCGGAGGCCGTGGGCTGCCGTCATCTTGCCCG
GATCTTGGCATCCCTCGAGCTCCTCCGGCAAGGGACGCAGTGCGGCTTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13996.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis