Browse Element(s) Details


OsAffx.14047.1.S1_at

Description tigr:9632.m02888
TID=OsAffx.14047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3046011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g30440NANA4+17992641..17996530retrotransposon protein, putative, unclassified
LOC_Os04g30450OsAffx.14046.1.S1_at11/114+18003290..18006493Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os04g30460OsAffx.14047.1.S1_at11/114+18010562..18012575hypothetical protein
LOC_Os04g30470OsAffx.26253.1.S1_at11/114+18013500..18016665U-box domain containing protein
LOC_Os04g30480NANA4+18017687..18017935hypothetical protein
LOC_Os04g30490OsAffx.26254.1.S1_at10/114+18025675..18029365MATE efflux family protein, expressed
LOC_Os04g30500OsAffx.26255.1.S1_at11/114+18031526..18032053hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14047.1.S1_at--191--7651Chr04:18010848..18010872 (25 bp)
GGGAGACGCTCATCTCGTCCATCCT
LOC_Os04g30460
OsAffx.14047.1.S1_at--214--9431Chr04:18010971..18010995 (25 bp)
TCGTGTTCGACGACAGGCTGTACGC
LOC_Os04g30460
OsAffx.14047.1.S1_at--406--9371Chr04:18010977..18011001 (25 bp)
TCGACGACAGGCTGTACGCGCTGCT
LOC_Os04g30460
OsAffx.14047.1.S1_at--654--8351Chr04:18011099..18011123 (25 bp)
GGCGGCTGCCGGTCGCTGTTCATCA
LOC_Os04g30460
OsAffx.14047.1.S1_at--803--4131Chr04:18011112..18011136 (25 bp)
CGCTGTTCATCACGTTCTCCAAGGG
LOC_Os04g30460
OsAffx.14047.1.S1_at--155--7711Chr04:18011135..18011159 (25 bp)
GGGTCGCCATTAACGCGCGAAGAGA
LOC_Os04g30460
OsAffx.14047.1.S1_at--634--10491Chr04:18011144..18011168 (25 bp)
TTAACGCGCGAAGAGATCGAAGAGT
LOC_Os04g30460
OsAffx.14047.1.S1_at--583--5871Chr04:18012414..18012438 (25 bp)
GAGCCGCCGACGTACGGGAGGATCG
LOC_Os04g30460
OsAffx.14047.1.S1_at--800--7651Chr04:18012429..18012453 (25 bp)
GGGAGGATCGTGTTCCGCCACGCGG
LOC_Os04g30460
OsAffx.14047.1.S1_at--389--8611Chr04:18012487..18012511 (25 bp)
TGGTGAAGCTGGTCATCAACGGCCG
LOC_Os04g30460
OsAffx.14047.1.S1_at--479--8391Chr04:18012521..18012545 (25 bp)
GGCGCGCAAGTACTTCCCCAGGAAA
LOC_Os04g30460
Target Sequence 
GGGAGACGCTCATCTCGTCCATCCTGGGCGGCGGCGGCATCGACGTCCGCCGCTTCTTCGCGCTCGTCCCGGACGACGCG
CCGCGCCGCGGCGTCGCCGAGGTGCTCGACGGCGTCGGGGCGCTCGTGTTCGACGACAGGCTGTACGCGCTGCTGCGCCG
CCACGAGGAGGGCGGCGGCGCGGTCCTCCCGGCGGAGCTGGCGGCGCCTTACCGCCGGCCGCTTGCGCCGGCGCTGGCGC
CGGTCGGCGACGGCGGCTGCCGGTCGCTGTTCATCACGTTCTCCAAGGGGTCGCCATTAACGCGCGAAGAGATCGAAGAG
TACTTCACTGAGAGGTGGGGCGACTGCTTGGAGAAGGTGATGATGGAGAGGACGCCGGCCGGCGAGCCGCCGACGTACGG
GAGGATCGTGTTCCGCCACGCGGCGACGGCGGCCGCGGTGCTCGGCGGGGAACACCTGGTGAAGCTGGTCATCAACGGCC
GGCAGCTGCGGGCGCGCAAGTACTTCCCCAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis