Browse Element(s) Details


OsAffx.14069.1.S1_at

Description tigr:9632.m02976
TID=OsAffx.14069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bHLH transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g312909/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g081801/11Aspartic proteinase Asp1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed
LOC_Os04g31260NANA4+18512349..18513349hypothetical protein
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14069.1.S1_at--239--9771Chr04:18533712..18533736 (25 bp)
TAATGATTGCTTGGCAGATGGACAA
LOC_Os04g31290
OsAffx.14069.1.S1_at--170--2931Chr04:18533771..18533795 (25 bp)
AAGGACCTGCAGGCGCACGCCAGGA
LOC_Os04g31290
OsAffx.14069.1.S1_at--357--7892Chr11:4284092..4284182 (25 bp)
GGTTCTTCGTGACGGTGGAGTGCGA
LOC_Os11g08180
OsAffx.14069.1.S1_at--203--8011Chr04:18534103..18534127 (25 bp)
GGAGTCGCTGTCGTGCTTCACCGTG
LOC_Os04g31290
OsAffx.14069.1.S1_at--866--9411Chr04:18534113..18534137 (25 bp)
TCGTGCTTCACCGTGGAGAGCTCCA
LOC_Os04g31290
OsAffx.14069.1.S1_at--415--6011Chr04:18534128..18534152 (25 bp)
GAGAGCTCCACCGTCGGGTGCTCGC
LOC_Os04g31290
OsAffx.14069.1.S1_at--360--7531Chr04:18534164..18534186 (23 bp)
GTGGCAACTCTCACCCTCAAGGTTA
LOC_Os04g31290
OsAffx.14069.1.S1_at--497--2471NONE
AACTCTCACCCTCAAGGTTAGTGAA
NONE
OsAffx.14069.1.S1_at--680--3351NONE
CACCCTCAAGGTTAGTGAAGCAGAG
NONE
OsAffx.14069.1.S1_at--275--4611Chr04:18534998..18535022 (25 bp)
GCGAGTGCACGGTGAAGCTCTGGGT
LOC_Os04g31290
OsAffx.14069.1.S1_at--739--2691Chr04:18535012..18535036 (25 bp)
AAGCTCTGGGTGATGGCGGCTCTTC
LOC_Os04g31290
Target Sequence 
TAATGATTGCTTGGCAGATGGACAAGGCGTCGATCATCGCCGACGCGGTGGTGTACGTCAAGGACCTGCAGGCGCACGCC
AGGAAGCTCAAGGAGGAGGTCGCCGCGCTCGAGGAGGCGCGCCCGATCAGGCCGCCTCCGCCGTCCGCCGCCGCGCAACG
GCCGCAGAGACAGCCACGCCGCGTGGCGGCGGCGGCTGCCCAGCTGGCGAGGGCCGCGGACGCCGCCGCCGTGACGACAG
CGGCGGCGGCGCCGCACGGCGCGAGGGTGGCGCACGTCGGCGCGGCGCAGGTCGGGGAGGGGCGGTTCTTCGTGACGGTG
GAGTGCGAGCCGGCGGCGGCCGCGGCGAGAGGAGGAGGAGGAGGCGTGGCGGCGCCGGTCTGCGCCGCCGTGGAGTCGCT
GTCGTGCTTCACCGTGGAGAGCTCCACCGTCGGGTGCTCGCCGGACCGCGTCGTGGCAACTCTCACCCTCAAGGTTAGTG
AAGCAGAGGAGGATGTGTCGGCGATCAGCGAGTGCACGGTGAAGCTCTGGGTGATGGCGGCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis