Browse Element(s) Details


OsAffx.14072.1.S1_at

Description tigr:9632.m03004
TID=OsAffx.14072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3157011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31530OsAffx.14070.1.S1_at11/114+18672030..18673476hypothetical protein
LOC_Os04g31540OsAffx.14071.1.S1_at11/114+18674642..18675934F-box domain containing protein
LOC_Os04g31550Os.14285.2.S1_at11/114+18682233..18682955expressed protein
LOC_Os04g31550Os.54120.1.S1_at1/114+18682233..18682955expressed protein
LOC_Os04g31559NANA4+18687197..18687462NA
LOC_Os04g31570OsAffx.14072.1.S1_at11/114+18687934..18689148F-box protein interaction domain containing protein, expressed
LOC_Os04g31580OsAffx.26271.1.S1_at11/114+18689828..18691402F-box domain containing protein
LOC_Os04g31590OsAffx.32056.1.S1_at11/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31590OsAffx.32056.1.S1_x_at10/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.1.S1_s_at9/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.3.S1_s_at7/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.4.S1_s_at5/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14072.1.S1_at--409--1611Chr04:18689090..18689114 (25 bp)
AGCTGATGCTCGAGAGGGCGTTCCC
LOC_Os04g31570
OsAffx.14072.1.S1_at--131--7711Chr04:18689060..18689084 (25 bp)
GGGTCGAGATAGACGTCGCCACGCA
LOC_Os04g31570
OsAffx.14072.1.S1_at--6--8391Chr04:18689001..18689025 (25 bp)
GGCGAGACATTCGTCTGCAACCCAG
LOC_Os04g31570
OsAffx.14072.1.S1_at--55--8311Chr04:18688896..18688920 (25 bp)
GGCTATGATCCGTGGCGCCGCGCAA
LOC_Os04g31570
OsAffx.14072.1.S1_at--947--4871Chr04:18688693..18688717 (25 bp)
GCTTCTACTGGTGCACCAACGAGGA
LOC_Os04g31570
OsAffx.14072.1.S1_at--921--5911Chr04:18688656..18688680 (25 bp)
GAGCATGTTGCTCCGGTTTAGCCTT
LOC_Os04g31570
OsAffx.14072.1.S1_at--854--6811Chr04:18688641..18688665 (25 bp)
GTTTAGCCTTCGCAGCCACAAGTTC
LOC_Os04g31570
OsAffx.14072.1.S1_at--864--4391Chr04:18688627..18688651 (25 bp)
GCCACAAGTTCGACATGGTTCCATG
LOC_Os04g31570
OsAffx.14072.1.S1_at--413--9571Chr04:18688579..18688603 (25 bp)
TCTTCGCATTCAACACCGTGTCGGA
LOC_Os04g31570
OsAffx.14072.1.S1_at--949--8831Chr04:18687983..18688007 (25 bp)
TGATAGCACTATGCGCCTATGCGGG
LOC_Os04g31570
OsAffx.14072.1.S1_at--88--10131Chr04:18687966..18687990 (25 bp)
TATGCGGGTTGTGGTCACCGAATCC
LOC_Os04g31570
Target Sequence 
AGCTGATGCTCGAGAGGGCGTTCCCGGATGGGGTCGAGATAGACGTCGCCACGCACTGCGACGGCCTCATCGCCGTCACG
ACGGACGCCGGCGAGACATTCGTCTGCAACCCAGCCACCAAGGAGCTCGTCACGCTGCCGCTCGGCATCAGCTGCCACAA
CGGCTGCGTCGTCTGGGATCGGTTCGCGGCCATCGGCTATGATCCGTGGCGCCGCGCAACCGGGTGCTTCTACTGGTGCA
CCAACGAGGACGTCGGCAACCCGAGCATGTTGCTCCGGTTTAGCCTTCGCAGCCACAAGTTCGACATGGTTCCATGCCAT
CCGGGCTGCTCATCCGACGTCTTCGCATTCAACACCGTGTCGGAGCTGGACGGCTCAAAAACCGCCGCCGCTGCTCCATC
CCCCTCCGGCCCTCTTCGTCCGCGCTCACCCCCGCTTGAGCAGCTCGCCGGAAAGGCGGGCAGCAGCAAGAACGACTGCG
GCGGAGCTCCTTCTCTCCTCTTCCACCCCCTGATAGCACTATGCGCCTATGCGGGTTGTGGTCACCGAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis